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Tiêu đề Separation, Electroanalytical, and Spectrochemical Techniques
Tác giả Dr. Scott Van Bramer, Dr. William Reusch
Trường học Michigan State University
Chuyên ngành Organic Chemistry
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Số trang 134
Dung lượng 3,53 MB

Cấu trúc

  • 1.1 Table of Contents (0)
  • TIME 6 MATERIALS (6)
    • 2.1 Resume (7)
    • 2.2 Outline (8)
    • 2.3 Graphic Organiser (10)
    • 2.4 General Objective (11)
    • 2.5 Specific Objectives (11)
    • 2.6 Answer Key (19)
    • 3.1 Reference 1 (27)
    • 3.2 Reference 2 (27)
    • 3.3 Reference 3 (27)
    • 4.2 Required Readings (38)
    • 4.3 Separation Techniques (39)
    • 4.4 Distillation (40)
    • 4.5 Chromatography (44)
    • 4.6 Types of Chromatographic Techniques (50)
    • 4.7 Thin Layer Chromatography (51)
    • 4.8 Liquid Chromatography (53)
    • 4.9 Gas Chromatography (57)
  • UNIT II ELECTROANALYTICAL TECHNIQUES (9)
    • 4.10 Summary of the Learning Activity (62)
    • 4.11 List of Required Readings (62)
    • 4.12 Potentiometry (63)
    • 4.13 Voltammetry (0)
    • 4.14 Pulse Polarography (69)
  • UNIT III SPECTROSCOPY AND ATOMIC SPECTROSCOPIC TECHNIQUES (9)
    • 4.15 Summary of the Learning Activity (75)
    • 4.16 List of Required Readings (75)
    • 4.17 List of Relevant Useful Links (75)
    • 4.18 List of Relevant Multimedia Resources (76)
    • 4.19 Electromagnetic Radiation (76)
    • 4.20 Beer’s Law (82)
    • 4.21 Atomic Spectroscopic Techniques (85)
    • 4.25 List of Relevant Useful Links (90)
    • 4.26 List of Relevant Multimedia Resources (91)
    • 4.27 Ultraviolet- Visible Spectroscopy (91)
    • 4.28 Instrumentation for UV Visible Spectrometry (94)
    • 4.29 Infrared Spectroscopy (96)
    • 4.30 Identifying Functional Groups by Infrared Spectroscopy (97)
    • 5.2 Nuclear Magnetic Resonance Spectroscopy (105)
    • 5.3 Proton NMR (106)
    • 5.4 Carbon Nmr Spectroscopy (111)
  • UNIT IX MASS SPECTROMETRY (10)
    • 5.5 List Of Relevant Useful Links (116)
    • 5.6 Mass Spectrometry (116)
    • 5.7 Fragmentation Patterns (118)

Nội dung

MATERIALS

Resume

This module encompasses three interconnected subjects: Separation Techniques and Chromatographic Techniques, Electroanalytical Techniques, and Spectroscopic Methods It will be delivered through six learning units that highlight shared concepts and methodologies.

The unit on Separation Techniques and Chromatographic Techniques will explore fundamental separation methods commonly taught in schools, leading into a comprehensive discussion on various chromatography techniques, which will be introduced through an overview of general chromatographic principles.

Electro Analytical Techniques encompass the foundational principles of potentiometry, highlighting its widespread applications The discussion will then transition to voltammetry, covering a range of methods from polarographic techniques to cyclic and anodic stripping voltammetry.

This unit on Spectroscopy and Atomic Spectroscopic Techniques will explore the interaction between energy and matter, delve into the energy levels of atoms and molecules, and conclude with an overview of various atomic spectroscopic techniques.

Molecular Spectroscopy 1 explores the theory behind UV-Visible spectroscopy, detailing its origins and applications in both qualitative and quantitative analysis The course covers the instrumentation of modern UV-Visible spectrophotometers, culminating in a discussion on infrared spectroscopy This section focuses on the generation of infrared spectra, the significance of specific peaks associated with various functional groups, and the practical application of IR in identifying functional groups and compounds.

Molecular Spectroscopy 2 explores the phenomenon of nuclear magnetic resonance (NMR), focusing on proton NMR and its correlation with chemical shifts in various molecular environments This section highlights the application of proton NMR in identifying functional groups within compounds The unit concludes by examining carbon NMR and its complementary role alongside proton NMR in the comprehensive analysis of chemical structures.

The final learning unit focuses on Mass Spectrometry, exploring the generation of mass spectra and their application in identifying organic compounds, culminating with an overview of the instrumentation used in mass spectrometry.

Outline

UNITI I SEPARATION AND CHROMATOGRAPHIC TECHNIQUES- 25 hours

• Separation Techniques o Solvent Extraction o Distillation

• Chromatography o Liquid Chromatography o Gas Chromatography

UNIT II ELECTROANALYTICAL TECHNIQUES- 15 Hours

• Potentiometry. o Ion Selective Electrodes o pH Glass Electrodes o Potentiometric Titrations

• Voltammetry o Polarography o Pulse Polarography o Cyclic Voltammetry o Anodic Stripping Voltammetry

UNIT III SPECTROSCOPY AND ATOMIC SPECTROSCOPIC TECHNIQUES- 20 hours

• Spectroscopy: o Electromagnetic Radiation o The Atom and Atomic Spectroscopy o Beers law

UNIT IV MOLECULAR SPECTROCOPY 1: UV-VISIBLE AND IR- 30 hours

• Ultraviolet- Visible Spectroscopy o Electronic transitions o Identification of functional groups Using UV o Instrumentation for UV Visible Spectrometry

• Infrared Spectroscopy o Molecular Vibration and IR Spectroscopy o Relative energies of IR Absorptions o Identifying Functional Groups by Infrared Spectroscopy

SEPARATION, ELECTROANALYTICAL, AND SPECTROCHEMICAL TECHNIQUES

INTRODUCTION TO SPECTROSCOPY AND ATOMIC SPECTROSCOPY

INTRODUCTION TO SPECTROSCOPY AND ATOMIC SPECTROSCOPY

SPECTROSCOPY 1 o Proton NMR o Chemical Shift o Correlation of HNMR With Structure

UNIT IX MASS SPECTROMETRY- 15 hours

• Mass Spectrometry o Fragmentation Patterns o Finger Print Spectrum

General Objective

This module aims to achieve three key objectives: to clarify the fundamental concepts of modern analytical techniques, to equip learners with essential skills for applying these concepts to simulated real-world scenarios, and to enhance students' understanding of the chemical principles that underpin these techniques.

Specific Objectives

At the end of the unit learners will be able to:

• Recall Separation methods that are taught in School

• Explain the principles underlying solvent extraction

• Solve numerical hypothetical problems regarding solvent Extraction

• Name and draw apparatus used for solvent extraction

• Name common column and plane Chromatographic Techniques.

• Explain the theory underlying each column and plane Chromatographic Techniques

• Recall equipment for plane and column chromatography

At the End of this unit the student willbe able to:

• Recall the theory on which potentiometry is based

Unit Learning objective(s) titration stations

• Recall the theory of Voltammetry

• Explain the concept of on which

• Interpret polarographic data to identify and quantify chemical Species

At the end of the unit learners be able to:

• Name the parts of the electromagnetic spectrum

• Recall effects of radiation on atoms and molecules

• Recall Plank’s law and apply it to spectroscopic problems

• Electronic energy levels in atoms and molecules

• Recall Beers law and apply to quantitative problems

• Explain electronic energy levels in atoms and transitions caused by absorption of radiation.

• Explain the concepts on which AAS, AES, AFS is based

• Recall AES, AFS and AAS Instrumentation

• Correlate Absorption of specific UV- Visible radiation frequencies to molecular functional groups

• Use hypothetical data to determine concentrations using UV data

• Recall parts of a modern UV Spectrophotometer and their functions.

• Recall the electronic transitions caused by absorption of IR Radiation

• Correlate Absorption of specific IR frequencies to molecular functional groups

• Correlate Absorption of specific IR frequencies to molecular structure of Simple organic molecules.

• Recall parts of a modern IR Spectrophotometer and their functions.

At the end of the unit learners will be able to:

• Explain how the phenomenon of NMR arises

• Recall nuclei that exhibit NMR

• Correlate Absorption of specific HNMR frequencies to molecular functional groups

• Correlate Absorption of specific HNMR frequencies to molecular structure of Simple organic molecules.

• Explain the special features of C-13 NMR phenomena

• Recall the nature of information provided by C-13

Unit Learning objective(s) their functions.

6 Mass Spectrometry At the end of the unit learners be able to:

• Explain how the phenomenon of mass spectrum arises

• Explain rules followed by fragmentation in Mass spectrum

• Correlate mass spectrum to specific structural elements in a molecule

• Use the mass spectrum to identify the molecular species.

• Use high resolution mass spectrum and molecular mass calculator to uniquely identify structural elements

• Recall parts of a modern mass Spectrometer and their functions.

1) A beryllium atom has 4 protons, 5 neutrons, and 4 electrons What is the mass number of this atom?

2) The lowest principal quantum number for an electron is

D) acids mixed with bases make stronger acids

4) Neutral solutions have a pH of:? a)0 b) 1 c) 7 d)10

5) Compared to the charge and mass of a proton, an electron has a) the same charge and a smaller mass b) the same charge and the same mass c) an opposite charge and a smaller mass d) an opposite charge and the same mass

6) What is the empirical formula of the compound whose molecular formula is P4O10 a) PO b) PO2 c) P2O5 d) P8O20

7) Which of the following conversions requires an oxidizing agent? a) Mn 3+ > Mn 2+ b) C2H4 > C2H6 c) (2CrO4)2- > (Cr2O7) 2- d) SO2 > SO3

8 The hydrogen halides are all polar molecules which form acidic solutions Which of the following is the weakest acid? a) HI

9 Calculate the [H+] in a solution that has a pH of 8.38.

10) In all electrochemical cells, the process that takes place at the anode is _ and the process that takes place at the cathode is _.

A) oxidation, reduction b) reduction, reduction c) reduction, oxidation d) oxidation, oxidation

11) What is the oxidation state of S in H2SO3? a) +4 b) +2 c) 0 d) +6 d) 1.00 volts

13) The equation that represents a reaction that is not a redox reaction is: a) Zn + CuSO4 → ZnSO4 + Cu b) 2H2O2 → 2H2O + O2 c) H2O + CO2 → H2CO3 d) 2H2 + O2 → 2H2O

14) A mole of electrons has a charge of 96,485 coulombs per mole of electrons This quantity is known to chemists as: a) 1 watt b) 1 Ampere c) 1 joule d) 1 faraday

15) Which of the following properties of water explains its ability to dissolve acetic acid? a) The high surface tension of water, which is due to the formation of hydrogen bonds between adjacent water molecules b) The ability to serve as a buffer, absorbing the protons given off by acetic acid. c) The ability to form hydrogen bonds with the carbonyl and the hydroxyl groups of acetic acid. d) None of the above

17) If the concentration of H + n a solution is 10 - 3 M, what will the concentration of OH - be in the same solution at 25° C?

18) How many ml of a 0.4 M HCl solution are required to bring the pH of 10 ml of a 0.4 M NaOH solution to 7.0 (neutral pH)?

20) Which element has the highest first ionization energy? a) Aluminium b) Sodium c) calcium d) phosphorus

Answer Key

Less than 30% Learner strongly advised review prerequisite knowledge concepts before proceeding with the module

Between 30-60% learner is prepared to continue with the module but may be required to refresh some of the areas

Above 60% Learner is well prepared with the prerequisite knowledge

Solvent is the term for the organic layer

Diluent is the term for an inert liquid used to dissolve an extractant, and to dilute the system Extractant is the term for a metal extraction agent

Raffinate is the term for the aqueous layer after a solute has been extracted from it

Scrubbing is the term for the back extraction of an unwanted solute from the organic phase Stripping is the term for the back extraction from the organic phase

Asymmetry: A factor describing the shape of a chromatographic peak Theory assumes a

A Gaussian-shaped peak is characterized by its symmetry, and the peak asymmetry factor is defined as the ratio of the distance from the peak apex to the back side of the chromatographic curve compared to the distance from the peak apex to the front side, measured at 10 percent of the peak height When this ratio exceeds 1, it indicates a tailing peak, whereas a ratio less than 1 signifies a fronting peak.

Baseline: The baseline is the line drawn by the data system when the only signal from the detector is from the mobile phase.

Chromatography: A chemical separation technique based on the differential distribution of the constituents of a mixture between two phases, one of which moves relative to the other. phase.

Dead volume (V d ): The volume outside of the column packing itself The interstitial volume

Dead volume is the total of intraparticle and interparticle volume, along with the extracolumn volume contributed by components such as the injector, detector, connecting tubing, and end fittings This volume can be quantified by injecting an inert compound that does not interact with the column packing It is commonly abbreviated as Vo or Vm.

UV/Visible light absorbance, differential refractive index, electrochemical, conductivity, and fluorescence.

In chromatographic processes, a sample is introduced at the top of a column and is subsequently displaced by a more strongly sorbed compound, leading to the sharpening of eluting sample solute zones This technique involves the displacement of sample molecules by one another and by the stronger sorbent Displacement methods are primarily utilized in preparative EPLC applications, enhancing the efficiency of separation.

External standards: A separate sample containing known quantities of the same compounds of interest External standards are used primarily for peak identification by comparing elution times.

Hydrophilic, commonly known as water-loving, refers to both water-compatible stationary phases and water-soluble molecules Most columns designed for protein separation are inherently hydrophilic, ensuring they do not adsorb or denature proteins in aqueous environments.

An injector is a crucial mechanism designed to accurately introduce a specific volume of sample into the mobile phase stream It can range from a basic manual device to an advanced auto sampler, which allows for automated injections of various samples, enabling unattended operation.

Partition coefficient (K): The amount of solute in the stationary phase relative to the amount of solute in the mobile phase It can also be the distribution coefficient, KD.

Retention time (t R ’): The time between injection and the appearance of the peak maximum.

The adjusted retention time tR’ adjusts for the column void volume

Retention volume (V R) refers to the amount of mobile phase needed to elute a substance from a chromatography column It is calculated using the void volume (Vm), the distribution coefficient (KD), and the stationary phase volume (Vs).

Stationary phase: The immobile phase involved in the chromatographic process The

In electroanalytical chemistry, several key concepts play a crucial role in understanding the behavior of electrochemical systems The background current, which is not due to the chemical reaction of the analyte, consists of two components: the capacitive current, resulting from the electrode acting as a capacitor and becoming charged, and the charging current, also known as the capacitive current The movement of ions in a solution is driven by two main factors: diffusion, which occurs due to a concentration gradient, and migration, which is caused by a potential gradient The half-cell, a fundamental component of an electrochemical cell, consists of an electrode, an electrically conductive solvent system, analyte, and a salt bridge connection The half-wave potential, a measure of the formal potential, is the potential at half of the peak or limiting current.

Absorption spectroscopy is a technique that measures the amount of radiation absorbed by a sample at specific wavelengths The absorption of radiation varies according to the molecular structure of the sample, as different electronic transitions lead to absorption at distinct wavelengths.

BEER-LAMBERT LAW An equation relating absorbance, path length, molar absorption coefficient and concentration of the sample: A = cl

CHROMOPHORE A chromophore is a functional group that is responsible for absorption e.g. an alkene absorbs at max7nm.

CONJUGATION An extended series of alternating single and double/triple bonds which causes the p orbitals to overlap Conjugated systems tend to show absorption in the visible region

A double bond occurs when one atom, such as carbon, hybridizes its s orbital and two of its p orbitals to create three sp² orbitals, which form sigma bonds with other atoms like hydrogen or carbon The remaining p orbital then forms a pi bond with another carbon that is also sp² hybridized.

ELECTROMAGNETIC SPECTRUM The range of electromagnetic energy with wavelengths ranging from 10 5 m (radio waves) to 10 -14 m (gamma radiation) In between these extremes is the infrared, visible, ultraviolet and X-ray regions.

Fluorescence is a process where an electron transitions from its ground state to an excited state As the electron loses energy, it initially dissipates heat through vibrational relaxation, and subsequently emits light, known as fluorescence, when it returns to its ground state.

HOMO Highest Occupied Molecular Orbital the orbital in a molecule where the highest energy level is occupied by an electron at absolute zero.

LUMO Lowest Unoccupied Molecular Orbital, the lowest energy orbital which is not occupied by an electron at absolute zero.

Molecular orbitals are formed through the interaction of atomic orbitals during bond formation These orbitals can be categorized into bonding orbitals, which have lower energy than the original atomic orbitals; anti-bonding orbitals, which possess higher energy; and non-bonding orbitals, which maintain an equal energy level.

SPECTROSCOPY The method of producing and analyzing data to allow determination of the structure of molecules.

Transmittance refers to the proportion of radiation that successfully passes through a sample without being absorbed It is calculated by dividing the amount of incoming radiation by the amount of radiation that transmits through the sample When this ratio is multiplied by 100, it yields the percentage of transmission.

ULTRAVIOLET REGION The region of the electromagnetic spectrum which has wavelengths between 400-4nm The UV region is split into three more regions: near UV (400-300nm), far

UV radiation is categorized into two types: UV (300-200nm) and extreme or vacuum UV (less than 200nm) The vacuum UV region is characterized by its absorption by oxygen, necessitating the evacuation of the apparatus when utilizing vacuum UV radiation.

VISIBLE REGION The region of the electromagnetic spectrum (700-400nm) which the human eye is sensitive to and sees as white light and colours

WAVELENGTH The measurement of waves from peak to peak e.g radio waves have a wavelength of up to 10km where gamma radiation have wavelengths as short as 10 -14 m (0.00000000000001m).

Mass spectrometry is a powerful analytical technique that generates ions from atoms or molecules and separates them based on their charge-to-mass ratios (m/z) using an analyzer, followed by detection.

Double focusing utilizes a combination of electrostatic (E) and magnetic (B) fields to correct energy variations in ions produced by the source, thereby enhancing the resolution of the analyzer This technique is essential for achieving precise measurements and is relevant in both forward and reverse geometries.

Reference 1

Title: Spectrometric Methods of identification of organic Compounds,

Authors: Robert M Silverstein; Francis X Webster; David J Kiemle

This book serves as a comprehensive guide to the three primary types of spectrometry utilized in spectrometric identification: mass spectrometry, infrared spectrometry, and nuclear magnetic resonance spectrometry Employing a problem-solving methodology, it includes a wealth of reference charts and tables Additionally, the text presents a diverse array of real-data problems designed to challenge practicing chemists.

This reference guide is designed to help students develop practical skills in interpreting spectra Learners are encouraged to utilize this book for practice questions to master various techniques By working through two to three problems for each technique, students can achieve complete mastery of spectroscopy This book serves as the essential reference for mastering these skills.

UV, IR, NMR and MS spectroscopy.

Reference 2

Title: Principles of Instrumental Analysis

Authors: Douglas A Skoog, F James Holler, and Stanley R Crouch:

Publishers: Brooks Cole; 6th edition 2006

Abstract: This book places an emphasis on the theoretical basis of each type of instrument, its optimal area of application, its sensitivity, its precision, and its limitations.

Rationale: This book covers all aspects of this module in a very simplified way but it is the primary reference for Electro analytical Techniques and chromatographic methods.

Reference 3

Title: The Essential Guide to Analytical Chemistry

This book serves as a concise reference guide for the module, presenting all covered material in an easily accessible pocket-sized format Its unique layout features vibrant diagrams alongside succinct text, facilitating quick access to relevant information Additionally, clear schematic diagrams highlight essential procedures and instrumentation, complemented by straightforward spectra that showcase real-world applications.

This book serves as a supplementary resource to enhance learners' comprehension of the module, but it is not intended for initial learning of the topics due to its less comprehensive depth compared to references 2 and 3.

Address: http://www.mhhe.com/physsci/chemistry/carey/student/olc/ch13ir,html

Summary: This link is part of a large course of chemistry for purposes of this module

Learners should focus on chapter thirteen, which simplifies the module's content and makes it more accessible This chapter serves as an alternative study resource, offering theoretical concepts, tutorials, and practical examples to enhance understanding.

Justification: The worked examples in this reference provide practice in solving problems associated with the module and reinforcing understanding concepts

Address: http://ull.chemistry.uakron.edu/analytical/Spectrophotometry/

This website offers concise summaries of key concepts from the module, aiding learners in retaining important facts and understanding essential topics By providing these streamlined notes, the site enhances the educational experience and supports effective study practices.

Summary: This site contains a collection of practice problems

Justification: These problems are useful for mastering molecular spectroscopy and mass spectrometry.

Address: http://www.cem.msu.edu/~reusch/VirtualText/Spectrpy/spectro.htm#contnt

Summary: This site contains a comprehensive organic Chemistry Course

Justification: The approach of this course can provide deeper understanding of material covered in this module. http://www.chromatography-online.org/topics/gas/chromatography/detectors.html

Summary: This site is one of the most comprehensive chromatography sites

Justification: The depth is a little above what is required for this module should be used as a reference. http://www.cis.rit.edu/htbooks/nmr/bnmr.htm

Summary: This site offers a good treatment of the 13-Carbon NMR with frequent explanations accompanied by spectrums

The treatment provided exceeds the module's requirements, so learners are encouraged to utilize it solely as a reference.

Summary: This is a student report on AAS

Justification: This page presents atomic spectroscopy in a simplified form http://www.chemguide.co.uk/index.html#top

Originally designed for UK A level chemistry students, the site has expanded to include resources for various UK syllabuses such as A level, IB, Scottish Advanced Higher, and Cambridge International It is now utilized by learners in equivalent courses globally, including those starting university-level studies.

Justification: This site contains very simplified explanations of the material covered in this module Justification

4 MULTI MEDIA RESOURCES http://www.colby.edu/chemistry/NMR/H1pred.html

Summary: A nice collection of applications for interpreting NMR, IR and mass spectra Created at

Justification: this site provides many multimedia tools for reinforcing the learning of this unit http://www.shsu.edu/~chemistry/primers/primers.html

Summary: This site contains a large collection of multi media resources across all themes covered in this module.

Justification: This site should be used a source of multimedia resources

UNIT I SEPARATION AND CHROMATOGRAPHIC TECHNIQUES

4.1 Summary of the Learning Activity

At the end of the unit learners will be able to:

• Recall Separation methods that are taught in School

• Explain the principles underlying solvent extraction

• Solve numerical hypothetical problems regarding solvent Extraction

• Name and draw apparatus used for solvent extraction

• Name common column and plane chromatographic techniques.

• Explain the theory underlying each column and plane Chromatographic Techniques

• Recall equipment for plane and column chromatography

Required Readings

is a crucial method that transforms a mixture or solution into distinct product mixtures, aiming for purity by exploiting differences in physical or chemical properties This process is essential for the industrial economy, as raw materials often require separation to be useful Separation techniques can be analytical, focusing on identification without harvesting, or preparative, preparing fractions for further processes Examples of separation methods include distillation, centrifugation, and chromatography, each tailored to achieve specific purification goals Both complete and incomplete separations may involve multiple operations to yield desired products, highlighting the importance of separation science in various applications.

Chromatography http://en.wikipedia.org/wiki/HPLC http://en.wikipedia.org/wiki/Chromatography

4.2.1 List of Relevant Useful Links http://www.chromatography-online.org/Principles/Introduction/rs1.html http://antoine.frostburg.edu/chem/senese/101/matter/chromatography.shtml http://www.chemguide.co.uk/analysis/chromatogrmenu.html#top http://www.chemguide.co.uk/analysis/chromatography/thinlayer.html#top http://www.rpi.edu/dept/chem-eng/Biotech-Environ/CHROMO/be_types.htm http://www.forumsci.co.il/HPLC/modes/modes3.htm http://www.chem.ubc.ca/courseware/121/tutorials/exp3A/columnchrom/ http://teaching.shu.ac.uk/hwb/chemistry/tutorials/chrom/gaschrm2.htm

Separation Techniques

Liquid-liquid extraction, also known as solvent extraction or partitioning, is a technique used to separate compounds based on their solubility in two immiscible liquids, typically water and an organic solvent This method involves transferring a substance from one liquid phase to another, where an aqueous solution containing solutes is mixed with an organic solvent The two liquids are vigorously shaken to enhance contact, and then allowed to stand, enabling the phases to separate effectively.

The partition or distribution coefficient (KD) quantifies the concentration ratio of a compound in two immiscible solvents at equilibrium, serving as an indicator of the compound's differential solubility between these solvents.

Water is commonly selected as one of the solvents, with a hydrophobic solvent like octanol as the second choice Both the partition and distribution coefficients serve as indicators of a chemical substance's hydrophilicity (water-loving) or hydrophobicity (water-hating).

The solubility of a solute is influenced by the polarity of both the solute and the solvent Generally, polar solutes dissolve more readily in polar solvents, while non-polar solutes exhibit greater solubility in organic solvents However, non-polar solutes that contain a sufficient number of hydrophilic functional groups, such as hydroxyl and sulfonic groups, can enhance their solubility in polar solvents.

Generally ionic compounds would not be expected to extract into organic compounds, these can be extracted by reacting them with complexing agents to form large neutral non polar entities.

Distillation

Laboratory scale distillations primarily utilize batch distillation methods The distillation apparatus, commonly known as a still, includes essential components: a reboiler or pot for heating the source material, a condenser for cooling the vapor back into liquid form, and a receiver for collecting the purified liquid, known as the distillate Various techniques for laboratory scale distillation are available.

In simple distillation, hot vapours are directed into a condenser, where they are cooled and condensed As a result, the distillate obtained is not pure; its composition mirrors that of the vapours at specific temperature and pressure conditions, which can be determined using Raoult's law.

Simple distillation is typically employed to separate liquids with significantly different boiling points, generally those differing by at least 25 °C This method is also effective for isolating liquids from non-volatile solids or oils, as the vapor pressures of the components are usually distinct enough to facilitate separation according to Raoult's law.

When the boiling points of components in a mixture are closely aligned, fractional distillation becomes essential for effective separation This process utilizes repeated vaporization and condensation cycles within a packed fractionating column to achieve optimal separation of the components.

Figure 1: Fractional distillation apparatus: http://en.wikipedia.org/wiki/Fractional_distillation

A spinning band distillation system enhances separation efficiency by utilizing a spinning band made of Teflon or metal, which promotes intimate contact between rising vapors and descending condensate This interaction effectively increases the number of theoretical plates, leading to improved distillation outcomes.

As the solution is heated, its vapours ascend the fractionating column, cooling and condensing on the condenser walls and packing material The condensate is then reheated by the rising vapours, leading to further vaporization According to Raoult's law, the composition of the newly formed vapours is determined at each stage Each vaporization-condensation cycle, known as a theoretical plate, results in a progressively purer solution of the more volatile component However, it's important to note that these cycles do not occur at the same position within the column, making the theoretical plate a conceptual rather than a precise representation.

Figure 2: Steam distillation: http://en.wikipedia.org/wiki/Steam_distillation accessed March 2008

Steam distillation is an effective technique for extracting heat-sensitive compounds by passing steam through a heated mixture of raw materials According to Raoult's law, the target compound vaporizes based on its partial pressure The resulting vapor mixture is then cooled and condensed, typically producing distinct layers of oil and water.

Steam distillation useful for compounds which boil beyond their decomposition temperature at atmospheric pressure and which would therefore be decomposed by any attempt to boil them under atmospheric pressure.

Certain compounds exhibit high boiling points, making it more effective to reduce the pressure rather than increase the temperature for boiling By lowering the pressure to match the compound's vapor pressure at a specific temperature, boiling and subsequent distillation can begin This method, known as vacuum distillation, is frequently utilized in laboratories, often using a rotary evaporator.

Chromatography

Chromatography is a separation process that is achieved by distributing the components of a mixture between two phases, a stationary phase and a mobile phase

In chromatography, components that strongly interact with the stationary phase are retained longer than those that prefer the mobile phase This differential retention leads to the elution of solutes at varying times, based on their distribution coefficients relative to the stationary phase, ultimately achieving effective separation.

Samples can be gaseous, liquid, or solid, varying from simple enantiomer blends to complex mixtures with diverse chemical species Analysis can be performed using either advanced, costly instruments or basic, affordable thin layer plates Chromatography underpins many analytical techniques, and this unit focuses on the most prevalent chromatographic methods and their applications.

Development is the term used to describe how components are separated during the chromatographic process.

There are three basic methods of chromatographic development frontal development, displacement development and elution development Most of the analytical chromatographic development is done by elution development

Elution development is best described as a series of absorption-extraction processes which

When a solute is introduced into a chromatographic system, its concentration in the mobile phase exceeds the equilibrium concentration for distribution within the stationary phase This prompts an immediate transfer of the solute into the stationary phase As additional mobile phase flows in, the concentration of the solute in the stationary phase rises until it reaches equilibrium, at which point desorption into the mobile phase occurs again, allowing the solute to be transported to a new location on the stationary phase.

The mobile phase continuously shifts the solute concentration profile forward, leading to an imbalance with the stationary phase This results in a higher solute concentration at the front of the peak in the mobile phase, prompting a net influx of solute into the stationary phase to restore equilibrium Conversely, at the rear of the peak, the stationary phase experiences an excess concentration of solute as the profile advances, further disrupting the equilibrium.

To re-establish equilibrium in a chromatographic system, a net amount of solute must exit the stationary phase and enter the mobile phase This movement occurs as the solute transitions through the system, entering the mobile phase at the rear of the peak while simultaneously transferring back to the stationary phase in the front half of the peak The net transfer of solute is balanced by the solute migrating from the stationary phase to the mobile phase at the rear half of the peak.

The distribution of analytes between phases can often be described quite simply An analyte is in equilibrium between the two phases;

The equilibrium constant, known as the partition coefficient (K), is defined as the ratio of the molar concentration of an analyte in the stationary phase to its molar concentration in the mobile phase.

Retention time (tR) refers to the duration from sample injection until an analyte peak reaches the detector at the end of the column, with each analyte exhibiting a unique retention time Additionally, the time required for the mobile phase to traverse the column is known as tM.

Figure 5: The Concept of Retention Time

The retention factor, commonly referred to as k' or the capacity factor, quantifies the migration rate of an analyte on a column For analyte A, the retention factor is specifically defined to measure its movement within the chromatographic process.

We define a quantity called the selectivity factor, α, which describes the separation of two species (A and B) on the column; α, = k 'B / k 'A

When calculating the selectivity factor, species A elutes faster than species B The selectivity factor is always greater than one

4.5.4 Band Broadening and Column Efficiency

Achieving optimal separations in chromatography requires the production of sharp and symmetrical peaks, which indicates that band broadening should be minimized Additionally, evaluating the efficiency of the column is essential for enhancing separation quality.

4.5.4.1 The Theoretical Plate Model of Chromatography

The plate model in chromatography posits that the chromatographic column consists of numerous distinct layers known as theoretical plates Each plate facilitates the separate equilibrations of the sample between the stationary and mobile phases As the analyte moves through the column, it transfers from one equilibrated mobile phase to the next across these plates.

Plates are a key theoretical concept used to assess column efficiency in chromatography, represented by the number of theoretical plates (N), where a higher number indicates better performance Additionally, the Height Equivalent to a Theoretical Plate (HETP) is another important metric, with a smaller value signifying enhanced efficiency.

If the length of the column is L, then the HETP is

The number of theoretical plates that a real column possesses can be found by examining a chromatographic peak after elution;

Where w1/2 is the peak width at half-height.

As can be seen from this equation, columns behave as if they have different numbers of plates for different solutes in a mixture.

4.5.4.2 The Rate Theory of Chromatography

A realistic understanding of chromatographic processes recognizes the time required for solute equilibration between the stationary and mobile phases, contrasting with the plate model's assumption of instantaneous equilibration This equilibration time influences the shape of chromatographic peaks, which is further impacted by the diverse pathways available to solute molecules as they navigate the stationary phase particles By examining the mechanisms that lead to band broadening, we derive the Van Deemter equation, which quantifies plate height in chromatography.

Where, u is the average velocity of the mobile phase A, B, and C are factors which contribute to band broadening.

The mobile phase flows through a column filled with a stationary phase, leading to solute molecules taking various random paths This variability in pathways results in the broadening of the solute band, as the differing lengths of these paths contribute to the overall dispersion.

The equilibration time of the analyte between the stationary and mobile phases is crucial in chromatography When the mobile phase moves quickly and the analyte strongly adheres to the stationary phase, the analyte in the mobile phase advances more rapidly, resulting in band broadening Consequently, increased mobile phase velocity exacerbates this broadening effect.

A plot of plate height vs average linear velocity, of mobile phase.

Such plots are of considerable use in determining the optimum mobile phase flow rate.

The selectivity factor α indicates the separation of band centers but does not consider peak widths A more comprehensive assessment of species separation is achieved through resolution measurement The resolution between two species, A and B, is defined as follows.

Baseline resolution is achieved when R = 1.5

Types of Chromatographic Techniques

Paper chromatography is a method used to separate and identify compounds in a sample by applying a small dot of the solution onto chromatography paper The paper is then placed in a sealed jar with a shallow solvent layer, allowing the solvent to rise and carry the sample mixture up the paper As the solvent moves, different compounds travel varying distances based on their interactions with the paper, enabling the calculation of an Rf value This value can be compared to standard compounds for the identification of unknown substances.

Thin Layer Chromatography

Thin layer chromatography (TLC) is a technique akin to paper chromatography, but it utilizes a thin layer of adsorbent materials like silica gel or alumina on a flat substrate, such as glass or plastic, instead of paper TLC offers advantages over paper chromatography, including quicker analysis times and improved separation of compounds, as well as the flexibility to choose various adsorbents In this method, different compounds in a sample mixture move distinct distances based on their interactions with the adsorbent, enabling the calculation of Rf values that can be compared to standard compounds for identifying unknown substances.

Figure 8: Development of a TLC separation: source http://www.waters.com/watersdivision/ContentD.asp?

Thin layer chromatography (TLC) commonly utilizes silica gel as the primary coating material, although cellulose is also frequently employed To create thin layers of cellulose, an aqueous slurry is prepared by blending approximately 15 grams of cellulose powder with 90 cm³ of distilled water for about one minute This cellulose powder is specifically designed for inorganic TLC and has a unique microcrystalline structure For convenience, ready-to-use precoated glass plates and plastic foils with popular adsorbents are available, including plastic sheets precoated with cellulose that may contain fluorescent materials, making them ideal for customizable inorganic TLC applications.

For optimal results in chromatographic analysis, the sample solution should contain 0.1 to 10 mg of the cation per cm³ and can be either neutral or a dilute acid Approximately 1 µL of this solution is applied with a micro syringe or micropipette near one end of the chromatoplate, positioned about 1.5 to 2.0 cm from the edge After application, the chromatoplate should be air-dried, and there is no need for equilibration before initiating the development process.

The development of chromatographic plates typically employs the ascending technique, where the plate is submerged in a redistilled or chromatographic grade solvent to a depth of 0.5 cm To enhance solvent saturation, the chamber is ideally lined with filter paper that dips into the solvent at the bottom Development continues until the solvent front reaches a distance of 10-15 cm, after which the plate is taken out, and the solvent front is promptly marked with a pencil line.

In Thin Layer Chromatography (TLC) and paper chromatography, analytes can be identified by observing them under ultraviolet light To ensure safety during this process, it is essential to wear protective goggles or spectacles The detected spots can then be carefully marked using a needle for further analysis.

Column chromatography is a separation technique in which the stationary bed is placed within a tube.

Liquid Chromatography

Liquid chromatography (LC) is a column chromatography technique where the mobile phase is a liquid, and it can be performed in either a column or planar format The modern version of this method, known as high performance liquid chromatography (HPLC), employs small packing particles and operates under relatively high pressure for enhanced efficiency and separation.

High Performance Liquid Chromatography (HPLC) is a crucial analytical technique used for separating and identifying organic and inorganic compounds in various samples, including biological, pharmaceutical, food, environmental, and industrial sectors This method involves a liquid passing through a porous solid stationary phase, effectively eluting the solutes for analysis.

The stationary phase in chromatography is composed of tiny particles or liquid-coated particles that serve as a support within a column These particles can either fill the entire volume of the tube, creating a packed column, or be concentrated along the inner walls of the tube, allowing for an open tubular column that provides an unobstructed path for the mobile phase.

Figure 9: Column Chromatography Equipment rigid material (such as stainless steel or plastic) and is generally 5-30 cm long and the internal diameter is in the range of 1-9 mm

Figure 10: Components of an HPLC

Solvent Delivery System pushes the solvent stream through the instrument at constant flow rate

Sample injection system - introduces the sample into the liquid stream of the instrument

Column - a stainless steel tube packed with silicon beads that separates what I'm looking for (the caffeine) from other compounds (like sugar)

Detector - An optical sensor (usually) that detects changes in the characteristics of the solvent stream

Data System - A means of controlling the system components and storing, processing and

HPLC can be operated for a number of purposes

Analytical - Just Data High Sensitivity

Semi-Preparative - Data and a small amount of purified analyte (gram)

Preparative - Larger quantities of purified analytes (Kilograms) [High Capacity]

Separation of analytes is based on a number of mechanisms and each of these mechanisms result in a different mode of application of HPLC

Normal phase HPLC is a chromatographic technique that separates analytes based on their polarity, utilizing a polar stationary phase and a nonpolar mobile phase This method is particularly effective for polar analytes, which associate with the stationary phase and are retained longer during the separation process As the polarity of the analyte increases, so does the strength of its adsorption to the stationary phase, leading to longer elution times due to enhanced interactions between the polar analyte and the polar stationary phase compared to the mobile phase.

Reversed phase HPLC (RP-HPLC) utilizes a non-polar stationary phase combined with a moderately polar aqueous mobile phase A widely used stationary phase is treated silica, often modified with RMe2SiCl, where R represents straight-chain alkyl groups like C18H37 or C8H17 This setup results in longer retention times for non-polar molecules, facilitating the quicker elution of polar compounds Additionally, incorporating polar solvents into the mobile phase increases retention time, while adding hydrophobic solvents decreases it.

Size exclusion chromatography (SEC), also referred to as gel permeation chromatography or gel purified proteins, is the leading method used to determine the average molecular weight of both natural and synthetic polymers.

For more details on this topic, see Ion exchange chromatography.

Ion-exchange chromatography relies on the interaction between solute ions and charged sites on the stationary phase, with ions of the same charge being excluded from retention Key types of ion exchangers include polystyrene resins, which enhance stability through cross-linking, thereby reducing swerving and improving selectivity and equilibration time Additionally, cellulose and dextrin ion exchangers feature larger pore sizes and lower charge densities, making them ideal for protein separation Controlled-pore glass and porous silica are also utilized in this chromatography technique.

The chromatographic process utilizes the ability of biologically active substances to create stable, specific, and reversible complexes through various molecular forces These forces include Van der Waals interactions, electrostatic interactions, dipole-dipole interactions, hydrophobic interactions, and hydrogen bonds A highly efficient, bio-specific bond is established when multiple forces act simultaneously in complementary binding sites.

Formative LC and HPLC Exercise i) Name major components of a HPLC ii) Name three sub techniques of HPLC iii) Name the scales of application of HPLC and their applications

ELECTROANALYTICAL TECHNIQUES

Summary of the Learning Activity

At the end of this unit the student will be able to:

• Recall the theory on which potentiometry is based

• Explain the application of potentiometry to pH measurement, ion selective electrode and automatic titration stations

• Recall the theory of Voltammetry

• Interpret Voltammetric data quantitatively and qualitatively

• Explain the concept of on which polarographic analysis is based

• Interpret polarographic data to identify and quantify chemical Species

List of Required Readings

http://en.wikipedia.org/wiki/Electroanalytical_methods

4.11.1List of Relevant Useful Links http://www.chem.vt.edu/chem-ed/echem/electroc.html http://www.chem.vt.edu/chem-ed/echem/potentio.html http://electrochem.cwru.edu/ed/encycl/art-a03-analytical.htm http://ull.chemistry.uakron.edu/analytical/Voltammetry/ http://ull.chemistry.uakron.edu/analytical/index.html

Voltammetry

UNIT II ELECTROANALYTICAL TECHNIQUES- 15 Hours

• Potentiometry. o Ion Selective Electrodes o pH Glass Electrodes o Potentiometric Titrations

• Voltammetry o Polarography o Pulse Polarography o Cyclic Voltammetry o Anodic Stripping Voltammetry

UNIT III SPECTROSCOPY AND ATOMIC SPECTROSCOPIC TECHNIQUES- 20 hours

• Spectroscopy: o Electromagnetic Radiation o The Atom and Atomic Spectroscopy o Beers law

UNIT IV MOLECULAR SPECTROCOPY 1: UV-VISIBLE AND IR- 30 hours

• Ultraviolet- Visible Spectroscopy o Electronic transitions o Identification of functional groups Using UV o Instrumentation for UV Visible Spectrometry

• Infrared Spectroscopy o Molecular Vibration and IR Spectroscopy o Relative energies of IR Absorptions o Identifying Functional Groups by Infrared Spectroscopy

SEPARATION, ELECTROANALYTICAL, AND SPECTROCHEMICAL TECHNIQUES

INTRODUCTION TO SPECTROSCOPY AND ATOMIC SPECTROSCOPY

INTRODUCTION TO SPECTROSCOPY AND ATOMIC SPECTROSCOPY

SPECTROSCOPY 1 o Proton NMR o Chemical Shift o Correlation of HNMR With Structure

UNIT IX MASS SPECTROMETRY- 15 hours

• Mass Spectrometry o Fragmentation Patterns o Finger Print Spectrum

This module aims to achieve three key objectives: to elucidate the foundational concepts of modern analytical techniques, to equip learners with essential skills for applying these concepts to simulated real-world scenarios, and to enhance students' comprehension of the chemistry principles that underpin these techniques.

At the end of the unit learners will be able to:

• Recall Separation methods that are taught in School

• Explain the principles underlying solvent extraction

• Solve numerical hypothetical problems regarding solvent Extraction

• Name and draw apparatus used for solvent extraction

• Name common column and plane Chromatographic Techniques.

• Explain the theory underlying each column and plane Chromatographic Techniques

• Recall equipment for plane and column chromatography

At the End of this unit the student willbe able to:

• Recall the theory on which potentiometry is based

Unit Learning objective(s) titration stations

• Recall the theory of Voltammetry

• Explain the concept of on which

• Interpret polarographic data to identify and quantify chemical Species

At the end of the unit learners be able to:

• Name the parts of the electromagnetic spectrum

• Recall effects of radiation on atoms and molecules

• Recall Plank’s law and apply it to spectroscopic problems

• Electronic energy levels in atoms and molecules

• Recall Beers law and apply to quantitative problems

• Explain electronic energy levels in atoms and transitions caused by absorption of radiation.

• Explain the concepts on which AAS, AES, AFS is based

• Recall AES, AFS and AAS Instrumentation

• Correlate Absorption of specific UV- Visible radiation frequencies to molecular functional groups

• Use hypothetical data to determine concentrations using UV data

• Recall parts of a modern UV Spectrophotometer and their functions.

• Recall the electronic transitions caused by absorption of IR Radiation

• Correlate Absorption of specific IR frequencies to molecular functional groups

• Correlate Absorption of specific IR frequencies to molecular structure of Simple organic molecules.

• Recall parts of a modern IR Spectrophotometer and their functions.

At the end of the unit learners will be able to:

• Explain how the phenomenon of NMR arises

• Recall nuclei that exhibit NMR

• Correlate Absorption of specific HNMR frequencies to molecular functional groups

• Correlate Absorption of specific HNMR frequencies to molecular structure of Simple organic molecules.

• Explain the special features of C-13 NMR phenomena

• Recall the nature of information provided by C-13

Unit Learning objective(s) their functions.

6 Mass Spectrometry At the end of the unit learners be able to:

• Explain how the phenomenon of mass spectrum arises

• Explain rules followed by fragmentation in Mass spectrum

• Correlate mass spectrum to specific structural elements in a molecule

• Use the mass spectrum to identify the molecular species.

• Use high resolution mass spectrum and molecular mass calculator to uniquely identify structural elements

• Recall parts of a modern mass Spectrometer and their functions.

1) A beryllium atom has 4 protons, 5 neutrons, and 4 electrons What is the mass number of this atom?

2) The lowest principal quantum number for an electron is

D) acids mixed with bases make stronger acids

4) Neutral solutions have a pH of:? a)0 b) 1 c) 7 d)10

5) Compared to the charge and mass of a proton, an electron has a) the same charge and a smaller mass b) the same charge and the same mass c) an opposite charge and a smaller mass d) an opposite charge and the same mass

6) What is the empirical formula of the compound whose molecular formula is P4O10 a) PO b) PO2 c) P2O5 d) P8O20

7) Which of the following conversions requires an oxidizing agent? a) Mn 3+ > Mn 2+ b) C2H4 > C2H6 c) (2CrO4)2- > (Cr2O7) 2- d) SO2 > SO3

8 The hydrogen halides are all polar molecules which form acidic solutions Which of the following is the weakest acid? a) HI

9 Calculate the [H+] in a solution that has a pH of 8.38.

10) In all electrochemical cells, the process that takes place at the anode is _ and the process that takes place at the cathode is _.

A) oxidation, reduction b) reduction, reduction c) reduction, oxidation d) oxidation, oxidation

11) What is the oxidation state of S in H2SO3? a) +4 b) +2 c) 0 d) +6 d) 1.00 volts

13) The equation that represents a reaction that is not a redox reaction is: a) Zn + CuSO4 → ZnSO4 + Cu b) 2H2O2 → 2H2O + O2 c) H2O + CO2 → H2CO3 d) 2H2 + O2 → 2H2O

14) A mole of electrons has a charge of 96,485 coulombs per mole of electrons This quantity is known to chemists as: a) 1 watt b) 1 Ampere c) 1 joule d) 1 faraday

15) Which of the following properties of water explains its ability to dissolve acetic acid? a) The high surface tension of water, which is due to the formation of hydrogen bonds between adjacent water molecules b) The ability to serve as a buffer, absorbing the protons given off by acetic acid. c) The ability to form hydrogen bonds with the carbonyl and the hydroxyl groups of acetic acid. d) None of the above

17) If the concentration of H + n a solution is 10 - 3 M, what will the concentration of OH - be in the same solution at 25° C?

18) How many ml of a 0.4 M HCl solution are required to bring the pH of 10 ml of a 0.4 M NaOH solution to 7.0 (neutral pH)?

20) Which element has the highest first ionization energy? a) Aluminium b) Sodium c) calcium d) phosphorus

Less than 30% Learner strongly advised review prerequisite knowledge concepts before proceeding with the module

Between 30-60% learner is prepared to continue with the module but may be required to refresh some of the areas

Above 60% Learner is well prepared with the prerequisite knowledge

Solvent is the term for the organic layer

Diluent is the term for an inert liquid used to dissolve an extractant, and to dilute the system Extractant is the term for a metal extraction agent

Raffinate is the term for the aqueous layer after a solute has been extracted from it

Scrubbing is the term for the back extraction of an unwanted solute from the organic phase Stripping is the term for the back extraction from the organic phase

Asymmetry: A factor describing the shape of a chromatographic peak Theory assumes a

A Gaussian-shaped peak is characterized by its symmetry, and the peak asymmetry factor is determined by the ratio of distances at 10 percent of the peak height This ratio compares the distance from the peak apex to the back side of the chromatographic curve with the distance from the peak apex to the front side A peak asymmetry factor greater than 1 indicates a tailing peak, while a value less than 1 signifies a fronting peak.

Baseline: The baseline is the line drawn by the data system when the only signal from the detector is from the mobile phase.

Chromatography: A chemical separation technique based on the differential distribution of the constituents of a mixture between two phases, one of which moves relative to the other. phase.

Dead volume (V d ): The volume outside of the column packing itself The interstitial volume

Dead volume, represented as Vo or Vm, is the total of intraparticle and interparticle volume along with the extracolumn volume from the injector, detector, connecting tubing, and end fittings This volume can be measured by injecting an inert compound that does not interact with the column packing, allowing for accurate determination of the system's dead volume.

UV/Visible light absorbance, differential refractive index, electrochemical, conductivity, and fluorescence.

In a chromatographic process, a sample is introduced at the top of a column and subsequently displaced by a compound that has a stronger affinity for the stationary phase than the original mixture's components This displacement occurs as sample molecules push against each other and the more strongly sorbed compound, leading to the sharpening of the eluting sample solute zones Displacement techniques are primarily utilized in preparative EPLC applications.

External standards: A separate sample containing known quantities of the same compounds of interest External standards are used primarily for peak identification by comparing elution times.

Hydrophilic, commonly known as water-loving, pertains to both water-compatible stationary phases and water-soluble molecules Most columns designed for protein separation are hydrophilic, ensuring they do not absorb or denature proteins in an aqueous environment.

An injector is a crucial mechanism used to accurately introduce a specific volume of sample into the mobile phase stream It can range from a basic manual device to an advanced auto sampler, allowing for automated injections of various samples, enabling unattended operation.

Partition coefficient (K): The amount of solute in the stationary phase relative to the amount of solute in the mobile phase It can also be the distribution coefficient, KD.

Retention time (t R ’): The time between injection and the appearance of the peak maximum.

The adjusted retention time tR’ adjusts for the column void volume

Retention volume (V R) refers to the amount of mobile phase needed to elute a substance from a chromatography column It is determined by the void volume (Vm), the distribution coefficient (KD), and the volume of the stationary phase (Vs) Understanding V R is crucial for optimizing separation processes in analytical chemistry.

Stationary phase: The immobile phase involved in the chromatographic process The

Electro Analytical Chemistry involves various concepts such as background current, which arises from non-chemical reactions of the analyte, and capacitive current, stemming from the electrode's behavior as a capacitor Key components include the half-cell, which contains an electrode, a conductive solvent, an analyte, and a salt bridge The half-wave potential (E1/2) indicates the potential at half the peak current, serving as a measure of formal potential In potentiometry, indicator electrodes respond to the activity of analyte ions, while ion selective electrodes (ISE) provide potential signals specific to certain ions Techniques like linear sweep voltammetry (LSV) measure current as the potential is systematically varied, and polarography refers to LSV using a dropping mercury electrode The potential, or electrochemical potential, quantifies the energy of an electrochemical reaction, and the potential window defines the range of potentials suitable for analytical measurements in a given solvent/electrode system A reference electrode, such as the silver/silver chloride electrode, maintains a known, constant electrochemical potential, typically measured in volts (V).

Absorption spectroscopy is a technique that measures the amount of radiation absorbed by a sample at specific wavelengths The absorption wavelength varies depending on the molecule, as different electronic transitions result in absorption at distinct wavelengths.

BEER-LAMBERT LAW An equation relating absorbance, path length, molar absorption coefficient and concentration of the sample: A = cl

CHROMOPHORE A chromophore is a functional group that is responsible for absorption e.g. an alkene absorbs at max7nm.

CONJUGATION An extended series of alternating single and double/triple bonds which causes the p orbitals to overlap Conjugated systems tend to show absorption in the visible region

A double bond occurs in carbon when one s orbital and two p orbitals hybridize to create three sp² orbitals, which form sigma bonds with atoms such as hydrogen or other carbon atoms The remaining p orbital then forms a pi bond with another sp² hybridized carbon, resulting in the characteristic structure of double bonds in organic compounds.

ELECTROMAGNETIC SPECTRUM The range of electromagnetic energy with wavelengths ranging from 10 5 m (radio waves) to 10 -14 m (gamma radiation) In between these extremes is the infrared, visible, ultraviolet and X-ray regions.

Fluorescence is a process where an electron transitions from its ground state to an excited state As the electron loses energy, it first dissipates heat through vibrational relaxation and subsequently emits light, known as fluorescence, when it returns to the ground state.

HOMO Highest Occupied Molecular Orbital the orbital in a molecule where the highest energy level is occupied by an electron at absolute zero.

LUMO Lowest Unoccupied Molecular Orbital, the lowest energy orbital which is not occupied by an electron at absolute zero.

Molecular orbitals are formed through the interaction of atomic orbitals during bond formation Bonding orbitals possess lower energy than the original atomic orbitals, while antibonding orbitals have higher energy levels Non-bonding orbitals maintain an equal energy state.

SPECTROSCOPY The method of producing and analyzing data to allow determination of the structure of molecules.

Transmittance refers to the proportion of radiation that successfully passes through a sample without being absorbed It is calculated by dividing the amount of incoming radiation by the amount of radiation that passes through the sample To express this value as a percentage, the resulting fraction is multiplied by 100, yielding the percentage transmission.

ULTRAVIOLET REGION The region of the electromagnetic spectrum which has wavelengths between 400-4nm The UV region is split into three more regions: near UV (400-300nm), far

SPECTROSCOPY AND ATOMIC SPECTROSCOPIC TECHNIQUES

Summary of the Learning Activity

At the end of the unit learners will be able to:

• Name the parts of the electromagnetic spectrum

• Recall the relative energies of different regions of the electromagnetic spectrum

• Recall common measurement units used in Spectroscopy

• Recall effects of radiation on atoms and molecules

• Recall electronic energy levels in molecules and possible transitions

• Recall Beers law and its application in quantitative analysis

• Explain electronic energy levels in atoms and transitions caused by absorption of radiation.

• Explain the concepts on which AAS is based

• Recall AES and AAS Instrumentation

• Calculate quantities based on hypothetical AAS and AES observations

List of Required Readings

• http://en.wikipedia.org/wiki/Atomic_Orbital

• http://en.wikipedia.org/wiki/Energy_level

• http://en.wikipedia.org/wiki/Atomic_absorption_spectroscopy

List of Relevant Useful Links

• http://ull.chemistry.uakron.edu/analytical/Atomic_spec/

List of Relevant Multimedia Resources

Spectroscopy involves examining how wave and particle radiation interacts with matter, while spectrometry focuses on measuring these interactions Instruments known as spectrometers or spectrographs are utilized for these measurements, and the resulting data is represented in a graphical format called a spectrum.

Spectroscopy plays a crucial role in physical and analytical chemistry, enabling the identification and quantification of substances through their emitted or absorbed spectrum This technique relies on the interaction between radiation and matter, which is fundamental to understanding spectroscopic terminology and principles Beer's law is a widely applied concept in quantitative spectroscopy, providing a basis for calculating concentrations of substances Additionally, atomic spectroscopic techniques are commonly employed in various analytical applications, offering valuable insights into the composition of materials.

Electromagnetic Radiation

Light is a type of electromagnetic radiation, part of a broader spectrum that includes radio waves, microwaves, infrared radiation, ultraviolet rays, X-rays, and gamma rays All these forms of electromagnetic radiation travel at the speed of light, approximately 3 x 10^8 meters per second The primary distinction among them lies in their wavelengths, which correlate with the energy they carry; shorter wavelengths correspond to higher energy levels.

Radio waves are used to transmit radio and television signals Radio waves have wavelengths

Infrared radiation is part of the electromagnetic spectrum, spanning from the visible light range to approximately one millimeter in wavelength This type of radiation includes thermal energy, such as the infrared waves emitted by burning charcoal, which produces heat without visible light In contrast, visible radiation refers to the portion of the spectrum that can be detected by the human eye.

Ultraviolet radiation has a range of wavelengths from 400 nm to about 10 nm Sunlight contains ultraviolet waves which can burn your skin

X-rays are high energy waves which have great penetrating power and are used extensively in medical applications and in inspecting welds X-ray images of our Sun can yield important clues to solar flares and other changes on the Sun that can affect space weather The wavelength range is from about ten billionths of a meter to about 10 trillionths of a meter

Gamma rays, with wavelengths shorter than ten trillionths of a meter, are more penetrating than X-rays and are produced by radioactive atoms and nuclear explosions These high-energy rays play a crucial role in various medical applications and have provided significant insights into cosmic phenomena, including the life cycles of stars and other violent events in the universe.

Figure 16: Electromagnetic Radiation http://en.wikipedia.org/wiki/Image:EM_Spectrum3-new.jpg#file

4.19.2 Units of Measurement of Energy of Electromagnetic Radiation

Radiation is understood to possess a particle nature, with each unit referred to as a photon The energy of a photon is directly linked to its frequency, expressed by the equation E = hν, where E represents energy, h is Planck's constant (6.624 x 10^-34 JS^-1), and ν denotes the frequency measured in hertz For convenience, radiation energy is often expressed in wave numbers (cm^-1) This relationship underscores the fundamental principles of electromagnetic radiation.

4.19.2.1 Interaction of Radiation with Matter

The energy levels requirements for all physical processes at the atomic and molecular levels

4.19.3 The Atom and Atomic Spectroscopy

Atomic spectroscopy encompasses three key analytical techniques: atomic emission, atomic absorption, and atomic fluorescence, all of which rely on electronic transitions in isolated atoms Since these atoms are isolated, their energy levels remain unaffected by neighboring atoms To grasp the interconnections among these techniques, it is essential to understand the fundamental structure of the atom and the specific atomic processes involved in each method.

An atom consists of a nucleus surrounded by electrons, with each element having a specific number of electrons linked to its atomic nucleus The most stable electronic configuration of an atom is called the "ground state," which represents its normal orbital arrangement Atoms can also accommodate electrons in higher energy orbits, known as "excited states," when energy of the appropriate magnitude is absorbed However, this excited state is unstable, prompting the atom to quickly revert to its ground state, releasing radiant energy equivalent to the absorbed energy as the electron returns to its original stable orbital position.

Figure 18: Adapted from Perkin Elmer Corporation: Excitation and Emission

The wavelength of emitted radiant energy is directly linked to the energy of electronic transitions in atoms Each element possesses a distinct electronic structure, resulting in unique wavelengths of emitted light In larger atoms, the complex orbital configurations allow for multiple electronic transitions, each producing a characteristic wavelength of light, as demonstrated by the equation E = hν.

The excitation and decay processes are central to atomic spectroscopy, where the energy absorbed during excitation or emitted during decay is measured for analytical applications.

During an excitation process, a molecule or atom absorbs a specific amount of energy, corresponding to a single frequency However, in reality, a collection of molecules exists in various energy states, each differing slightly in energy levels As a result, a sample of molecules produces absorption across a small energy range, leading to the formation of a narrow band or peak in the absorption spectrum.

Explain why absorption spectra for atomic species consist of discrete lines at specific wavelengths rather than broad bands as for molecular species.

Beer’s Law

When radiation interacts with atoms or molecules in a sample solution, it is absorbed, resulting in a decrease in radiant power The diagram illustrates a beam of monochromatic radiation with initial power P0 directed at the sample, where absorption occurs, and the exiting beam has diminished radiant power P.

The amount of radiation absorbed is dependent on the nature of the sample, the concentration of the sample and the length of the sample.

The amount of radiation absorbed may be measured in by a number of parameters:

A = log10 P0 / P A = log10 1 / T A = log10 100 / %TA = 2 - log10 %T

The last equation, A = 2 - log %T, is worth remembering because it allows you to easily

Figure 19: Demonstration of Beer's law

When light passes through a solution without any absorption, the absorbance is zero and percent transmittance is 100% Conversely, if all the light is absorbed, the percent transmittance drops to zero, resulting in infinite absorbance.

Beer’s law or Beer lambert law states as below

Absorbance (A) is a dimensionless quantity defined as A = log10(P0/P), where P0 is the incident light intensity and P is the transmitted light intensity The molar absorption coefficient (ε) is measured in L mol⁻¹ cm⁻¹, while the path length (b) refers to the distance light travels through the sample in the cuvette Additionally, the concentration (c) of the compound in the solution is expressed in mol L⁻¹.

In a 1 cm cuvette containing a blue copper sulfate solution, the intensity of light diminishes as it travels through the solution, with a maximum absorption at 600 nm According to the Law of Absorption, the light absorbed by each 0.2 cm layer of the solution remains constant, with an assumed absorption fraction of 0.5 for each segment This consistent reduction in light intensity can be analyzed to understand the behavior of light in colored solutions.

Figure 20: Plot of transmitance and absorbance versus pathlength

The equation A = εbc indicates that absorbance is directly related to the amount of the absorbing substance present in the light path of the cuvette When we graph absorbance versus concentration, the result is a linear relationship that passes through the origin (0, 0).

Note that the Law is not obeyed at high concentrations This deviation from the Law is not dealt with here.

Figure 21: Beers Law and Concentration

The Beer-Lambert law illustrates a direct linear relationship between concentration and absorbance, making absorbance a more effective measure of absorption than percentage transmittance (%T) This simplicity and clarity in the relationship enhance its application in analytical chemistry.

Molar Absorption ε is a measure of the amount of light absorbed per unit concentration.

Molar absorption is a constant for a particular substance, so if the concentration of the solution is halved so is the absorbance, which is exactly what you would expect.

Let us take a compound with a very high value of molar absorption, say 100,000 L mol -1 cm -1 , which is in a solution in a 1 cm path length cuvette and gives an absorbance of 1. ε = 1 / 1b c

Consider a compound with a very low value of ε, say 20 L mol -1 cm -1 which is in solution in a 1 cm path length cuvette and gives an absorbance of 1.

1 a) One mole of photons (Avogadro's number of photons) is called an Einstein of radiation. b) Calculate the energy in calories, of one Einstein of radiation of wave length 3000 A.

2 A compound of formula weight 280 absorbed 65.0% of the radiation at a certain wave- length in a 2-cm cell at a concentration of 15.0 mg/mL Calculate its molar absorption at that wavelength Wavelength/Frequency/Energy

3 One mole of photons (Avogadro's number of photons) is called an Einstein of radiation. Calculate the energy, in calories, of one Einstein of radiation at 3000 A.

4 A 20-ppm solution of a DNA molecule (unknown molecular weight) isolated from Escherichia coli was found to give an absorbance of 0.80 in a 2-cm cell Calculate the molar absorbance of the molecule.

5 A compound of formula weight 280 absorbed 65.0% of the radiation at a certain wavelength in a 2-cm cell at a concentration of 15.0 μg/mL Calculate its molar absorbance at that wavelength.

Atomic Spectroscopic Techniques

Electrons exist in energy levels within an atom These levels have well defined energies and electrons moving between absorb or emit energy equal to the difference between them

Atomic spectroscopy involves the absorption and emission of energy by electrons transitioning between energy levels, with this energy manifesting as photons The distinct energy of these transitions allows for the identification of an atom's element Since it is often more practical to measure the wavelength of light rather than its energy, the relationship between the light's wavelength and energy becomes crucial Additionally, the Beer-Lambert law describes how the concentration of atoms, the distance light travels through them, and the amount of light absorbed are interconnected.

Atomic fluorescence occurs when energy stored in atoms is released as light, and this emitted light is measured using atomic fluorescence spectroscopy To minimize scattered light, fluorescence is typically measured at a 90° angle from the excitation source, often utilizing a Pellin-Broca prism on a turntable to separate and analyze the light spectrum The wavelength of the emitted light indicates the identity of the atoms, and for low absorbances, the intensity of the fluorescence is directly proportional to the concentration of atoms Additionally, atomic fluorescence is generally more sensitive than atomic absorption, allowing for the detection of lower concentrations.

Atomic emission involves subjecting a sample to a high-energy thermal environment, which excites atoms and enables them to emit light This energy can be supplied through methods such as electrical arcs, flames, or plasma The resulting emission spectrum comprises specific wavelengths known as emission lines, which serve as unique identifiers for qualitative analysis of elements Notably, atomic emission with electrical arcs has gained popularity in qualitative analysis due to its effectiveness.

Emission techniques are essential for quantifying the presence of elements in a sample In quantitative analysis, the intensity of light emitted at the specific wavelength of the target element is measured, with higher emission intensity indicating a greater number of analyte atoms One notable application of this method is flame photometry, which utilizes atomic emission for precise quantitative analysis.

The capability of an atom to absorb very specific wavelengths of light is utilized in atomic absorption spectrophotometry.

Atomic absorption measurements quantify the light absorbed at a specific resonant wavelength as it travels through a cloud of atoms The absorption of light increases predictably with the number of atoms in the light path, enabling a precise quantitative analysis of the analyte element present Utilizing specialized light sources and selecting appropriate wavelengths allows for the selective determination of individual elements, even in the presence of others.

To generate the atom cloud necessary for atomic absorption measurements, thermal energy is applied to the sample, breaking down chemical compounds into free atoms This process involves aspirating an analyte solution into a flame, where optimal conditions ensure that the majority of the atoms remain in their ground state, allowing them to effectively absorb light at the specific analytical wavelength emitted by a source lamp.

This technique involves exciting ground state atoms generated in a flame by directing a light beam into the atomic vapor The resulting emission from the decay of these excited atoms is measured, with the intensity of the "fluorescence" rising in correlation with higher atom concentrations, thus enabling quantitative analysis.

In atomic fluorescence, the source lamp is positioned at an angle to the optical system, allowing the light detector to capture only the fluorescence emitted by the flame, while excluding direct light from the lamp Maximizing lamp intensity is crucial, as sensitivity is directly proportional to the number of excited atoms, which depends on the intensity of the exciting radiation Notably, the emitted radiation from the atoms occurs at a different wavelength than that of the exciting radiation The intensity of the emitted light is diminished based on the concentration of atoms present in the flame cell, and this reduced intensity, denoted as I, is subsequently measured by the detector.

4.22.3 Formative Assessment i) Why is a sharp-line source desirable for atomic absorption spectroscopy? ii) Explain why flame emission spectrometry is often as sensitive as atomic absorption spectrophotometry, even though only a small fraction of the atoms may be thermally excited in the flame. iii) Why is a high-temperature nitrous oxide—acetylene flame sometimes required in atomic absorption spectrophotometry? iv) Why is high concentration of a potassium salt sometimes added to standards and

To determine the concentration of calcium in the sample in parts per million (ppm), the initial solution is diluted 1:10, with subsequent working standards prepared by further dilutions of 1:20, 1:10, and 1:5 The sample undergoes a dilution of 1:25, and strontium chloride is added to all solutions to achieve a final concentration of 1% (wt/vol) to prevent phosphate interference A blank solution with 1% SrCl is also prepared The absorbance signals recorded from the solutions in an air-acetylene flame are: blank at 1.5 cm, standards at 10.6 cm, 20.1 cm, and 38.5 cm, and the sample at 29.6 cm.

UNIT IV MOLECULAR SPECTROCOPY 1: UV-VISIBLE AND IR

4.23 Summary of the Learning Activity

At the end of the unit learners will be able to:

• Explain electronic energy levels in molecules and transitions caused by absorption of

• Explain the concepts on which UV visible spectroscopy is based

• Use hypothetical UV-visible Spectra to identify specific functional groups in a molecule

• Explain how molar extinction coefficient is used for quantitative analysis

• Use hypothetical data to calculate concentrations of solutions

• Name major elements of a UV-Visible spectrophotometers and their functions

• Recall the electronic transitions caused by absorption of IR Radiation

• Correlate Absorption of specific IR frequencies to molecular functional groups

• Correlate Absorption of specific IR frequencies to molecular structure.

• Recall parts of a modern IR Spectrophotometer and their functions

4.24 List of Required Readings http://en.wikipedia.org/wiki/Molecular_energy_state

List of Relevant Useful Links

http://www.scienceofspectroscopy.info/edit/index.php?title=UV_Absorption_Table http://teaching.shu.ac.uk/hwb/chemistry/tutorials/molspec/uvvisab4.htm

List of Relevant Multimedia Resources

http://www.cem.msu.edu/~parrill/AIRS/name_list.html

Ultraviolet- Visible Spectroscopy

Organic compounds absorb light energy in the visible and ultraviolet spectrum, leading to the excitation of electrons from their ground state to higher-energy states This process promotes electrons from δ, π, and n orbitals into anti-bonding orbitals Specifically, the anti-bonding orbital linked to a sigma bond is referred to as the δ* (sigma star) orbital, while the one associated with a pi bond is known as the π* (pi star) orbital.

Many molecules feature atoms with valence electrons that do not participate in bonding, known as nonbonding or lone electrons These electrons are predominantly found in the atomic orbitals of elements such as oxygen, sulfur, nitrogen, and the halogens.

The n electrons do not participate in bonding and thus lack associated antibonding orbitals When an electron occupies an antibonding orbital, it signifies that the molecule is in a high-energy state Additionally, the electron density between atomic nuclei is lower compared to that found at the same distance from an isolated nucleus In the excited state, certain electrons within the molecule may occupy antibonding orbitals, though not all do.

Electronic transitions in the ultraviolet and visible regions include δ→ δ*, n → δ*, n → π*, and n → π* transitions The energy needed for the δ → δ* transition is significantly high, which is why saturated hydrocarbons, where all valence shell electrons participate in single-bond formation, typically do not absorb light in the ordinary ultraviolet range.

Compounds with nonbonding electrons on atoms such as oxygen, nitrogen, sulfur, or halogens can exhibit absorptions due to n → δ* transitions These transitions occur at lower energy levels compared to δ → δ* transitions, which is why molecules with nonbonding electrons typically show absorption in the ultraviolet region.

Transitions to antibonding π* orbitals occur exclusively at unsaturated centers, such as double or triple bonds, and require lower energy, typically happening at longer wavelengths within the ordinary ultraviolet spectrum The diagram illustrates the relative electronic excitation energies for these transitions, highlighting that high-energy transitions (δ → δ*) take place at shorter wavelengths, while low-energy transitions (n → π*) occur at longer wavelengths.

4.27.2 The Effect of the Structural Environment

Identical functional groups in various molecules may absorb light at different wavelengths due to variations in energy changes for specific transitions The energy required for these transitions can differ among identical functional groups because of their unique structural environments Additionally, neighboring molecules can exert a slight yet significant influence on the energy state of a chromophore, affecting its absorption characteristics.

When multiple chromophoric groups are present in a molecule and separated by two or more single bonds, their effects on the spectrum tend to be additive, resulting in minimal electronic interaction.

Figure 23: electronic transitions arising from absorption of UV and visible

The molar extinction coefficient for a specific absorption is directly related to the likelihood of the electronic transition; higher probabilities result in larger extinction coefficients Typically, a specific type of chromophore maintains a consistent extinction coefficient across various molecules Consequently, when identifying the absorption peak for a chromophore, it is essential to consider the extinction coefficient, as absorption is defined by both the energy and the transition probability.

The electronic structures of molecules in high-energy states can exhibit varying polarity compared to their ground state In polar solvents, excited states that are more polar experience a shift in the absorption peak by 10-40 cm⁻¹ towards longer wavelengths, while less polar excited states show the opposite trend.

4.27.6 Identification of Functional Groups Using UV

A chromophore is defined as an isolated functional group that does not conjugate with other groups and demonstrates characteristic absorption in the ultraviolet or visible spectrum When a series of compounds share the same functional group without complicating factors, they typically absorb light at similar wavelengths and exhibit comparable molar extinction coefficients Consequently, analyzing a compound's spectrum alongside existing literature on known compounds can significantly assist in identifying the functional groups within the molecule.

Instrumentation for UV Visible Spectrometry

Light originates from a source and passes through slit 1, where a thin ray is allowed in The diffraction grating then selects the desired wavelength, which is further refined by slit 2 A filter permits only the chosen wavelength to proceed, while mirror 2 rotates to direct part of the beam to mirror 3 and the other part to mirror 4, creating both a reference beam and a sample beam.

This exercise reinforces the understanding of chromophores by identifying which compounds absorb in the UV region Specifically, it focuses on determining the electronic transitions responsible for UV absorption in the following compounds: a) CH3CO, b) CH2=CH-CH=CH2, and c) CH3CN.

Infrared Spectroscopy

4.29.1 Molecular Vibration and IR Spectroscopy

A molecule is best understood as a dynamic system of atoms connected by chemical bonds, akin to balls of varying masses linked by springs This structure allows for two primary types of vibrations: stretching, where the distance between atoms changes along the bond axis, and bending, where atoms shift position relative to the bond axis These vibrational modes require specific energy levels, with their frequencies corresponding to infrared radiation When infrared light at the same frequency interacts with the molecule, it absorbs energy, increasing the vibration's amplitude As the molecule returns to its ground state, the absorbed energy is released as heat.

4.29.2 Fundamental and Non Fundamental Absorption Bands

A nonlinear molecule with n atoms has 3n - 6 fundamental vibrations, leading to potential additional absorption bands due to overtones, combination bands, and difference bands Overtones occur at reduced intensity at fractions of the wavelength, while combination bands arise from the sum of different wave numbers, and difference bands from their differences However, not all vibrations result in IR absorption; only those that cause a change in dipole moment can be detected, meaning that only bonds between different atoms can contribute to IR spectra.

4.29.3 Relative Energies of IR Absorptions

The triple bond (absorption at4.4-5.0 àm, 2300-2000 cm-1) is stronger than the double bond (absorption at 5.3-6.7 àm, 1900-1500 cm-1), which in turn is stronger than the single bond (C

—C, C—N, and C—0 absorption at 7.7-12.5 àm, 1300-800 cm-1)

When single bonds involve small hydrogen atoms, such as C—H, O—H, or N—H, stretching vibrations occur at higher frequencies, ranging from 2.7 to 3.8 micrometers (3700 to 2630 cm-1) Specifically, the O—H bond absorbs near 2.8 micrometers (3570 cm-1) Additionally, a strong band observed at 5.82 micrometers (1718 cm-1) in the spectrum indicates the presence of a carbonyl group in the compound.

The spectrum alone may not clearly indicate the specific functional group of a compound, which could be an aldehyde, ketone, acid, ester, or amide To accurately identify a functional group, it is essential to analyze the spectrum for additional diagnostic absorption bands and to complement this analysis with traditional chemical reactions and solubility tests Importantly, the absence of specific absorption peaks serves as strong negative evidence; for instance, if the spectrum lacks absorption in the 5.4-6.3 µm (1850-1587 cm-1) range, it confirms the absence of a carbonyl group in the molecule.

Many of the absorption bands that organic compounds show in the infrared region cannot be interpreted with assurance.

Identifying Functional Groups by Infrared Spectroscopy

4.30.1.1 IR Spectra of Saturated Hydrocarbons

Saturated hydrocarbons exhibit characteristic absorption bands due to molecular vibrations, including C—H stretching around 2950 and 2820 cm-1, —CH2— bending at 1458 cm-1, and C—CH3 bending observed at 6.86 and 7.28 àm.

1458 and ~1380 cm-1) Weak absorption near 13.85 àm (722 cm-1) is caused by bending vibrations of the group — (CH2)n—, where n > 4.

Replacing a methylene group in a saturated hydrocarbon with an oxygen atom results in distinct absorption features due to strong C—O stretching vibrations, typically observed near 9 μm (approximately 1110 cm-1) This alteration leads to a predictable change in the spectrum, which now includes absorptions related to the presence of oxygen.

—H and C—O stretching vibrations in addition to the hydrocarbon chromophoric groups present The spectrum of Propanol CH3—(CH2)—CH 2OH,

Figure 25 illustrates a strong broad absorption at approximately 2.9 μm (or ~3448 cm⁻¹), attributed to the O—H stretching vibration of alcohol This broadening is characteristic of the polymeric association of hydroxyl groups and is influenced by hydrogen bonding.

If a compound contains a carbonyl group, the absorption caused by C==0 stretching is generally among the strongest present

Ketones typically exhibit carbonyl group absorption in the range of 5.7-6.0 µm (1754-1667 cm⁻¹), with the exact absorption position being influenced by factors such as ring size and the level of conjugated unsaturation.

Aldehydes exhibit absorption due to carbonyl stretching vibrations in a region similar to that of ketones A notable feature of aldehyde absorption is the presence of two weak bands resulting from C—H stretching vibrations This absorption wavelength shifts from the typical C—H stretching position around 3.4 µm (2940 cm⁻¹) to approximately 3.55 and 3.68 µm.

(-2820 and 2720 cm-1) The presence of two absorption bands in this region is due to the symmetric and asymmetric stretching modes of the C—H bond and C=0 bonds.

The absorption position of the carbonyl stretching vibration in esters and lactones is influenced by factors such as conjugated unsaturation and ring size, similar to ketones Typically, this absorption occurs in the general region of the C=O stretch.

The carbonyl stretching vibration absorption of a saturated carboxylic acid, typically observed at 1715 cm-1 (5.83 µm), experiences a shift to a longer wavelength when conjugated with an unsaturated group, as seen in benzoic acid, which has an absorption at 1701 cm-1 (5.88 µm).

All amides show strong absorption owing to carbonyl stretching and Absorptions resulting from N—H stretching vibrations of primary and secondary amides are in the 2.8-3.2 μm, (~3570-

Amines exhibit distinctive absorption features primarily due to N—H stretching vibrations occurring between 2.8-3.0 µm (approximately 3570-3333 cm-1) In dilute solutions within an inert solvent, primary amines show two sharp spectral bands in this range, resulting from symmetric and asymmetric N—H stretching.

H stretching vibrations; the spectra of secondary amines have only one band in this region, and tertiary amines do not absorb in this region.

To achieve optimal results in detecting olefins, it is essential to use concentrated solutions due to the weak intensity of the C=C stretching vibration absorption, which typically occurs in the 5.95-6.17 μm (approximately 1680-1620 cm-1) range The intensity of these absorptions increases when the ethylene bond is conjugated with unsaturated groups Additionally, a small peak associated with olefinic C=C—H stretching vibrations can be observed at 3.19 μm (3135 cm-1), located near the stronger C—H stretching vibrations of larger alkanes.

Acetylenic compounds exhibit absorptions due to carbon-carbon triple bond stretching vibrations in the range of 4.4-4.8 Åm (approximately 2275-2085 cm-1) These absorptions are typically weak, particularly when the acetylenic linkage is non-terminal The stretching vibration primarily leads to linear expansion and contraction of the molecule, resulting in minimal impact on the dipole moment Additionally, absorptions from the acetylenic C—H stretching vibration are also present.

There are four absorption bands in the 6-7 am (1667-1429 cm-1) region that are diagnostic of aromatic structure These occur near 6.25, 6.32, 6.67, and 6.90 àm (—1600, 1580, 1500, and

The absorption band around 1450 cm-1 is attributed to in-plane vibrations of C=C skeletal structures While the second band often appears as a shoulder to the first, its intensity increases when the aromatic nucleus is conjugated with unsaturated groups Additionally, the fourth band can be masked by strong absorptions from —CH2— bending vibrations in the presence of aliphatic groups Therefore, the lack of absorption in these regions suggests that the compound is likely not aromatic.

A number of absorption bands of variable intensity appear in the 10-15 àm (1000-670)

The absorption characteristics of aromatic compounds are influenced by C—H bending vibrations, which vary based on the number of adjacent free hydrogen atoms present in the aromatic nucleus Aromatic compounds with five adjacent hydrogen atoms exhibit strong absorption in the 13.3 and 14.3 μm regions (~750 and 700 cm⁻¹), while those with four adjacent hydrogen atoms, such as o-disubstituted benzene, primarily absorb near 13.3 μm (~750 cm⁻¹) Compounds with fewer adjacent hydrogen atoms typically display weaker absorptions that are harder to assign Notably, for benzene compounds, a significant absorption near 14.3 μm (~700 cm⁻¹) indicates that the compound cannot be a mono-substituted benzene if this region does not show strong absorption The spectra of biphenyl and other mono-substituted benzene compounds illustrate these absorption features.

In the 5-6 μm (2000-1670 cm-1) range of benzenoid compound spectra, low-intensity absorption bands, which are either overtone or combination bands, are present The specific substitution type of the benzene ring significantly influences both the quantity and relative positioning of these bands.

4.30.2 Formative Assessment i) Arrange the following bonds in order of IR absorption frequency of their stretching ii) Which of the following bonds will result in absorption IR

Infrared spectra reveal that the absence of an absorption band can be more informative regarding a compound's structure than the presence of one It is crucial to consider all absorption bands rather than selectively focusing on a few, as this comprehensive approach can lead to a better understanding of the compound.

Look for absorption bands in decreasing order of importance:

• the C-H absorption(s) between 3100 and 2850 cm-1 An absorption above 3000 cm-1 indicates C=C, either alkene or aromatic Confirm the aromatic ring by finding peaks at

1600 and 1500 cm-1 and C-H out-of-plane bending to give substitution patterns below

900 cm-1 Confirm alkenes with an absorption at 1640-1680 cm-1 C-H absorption between 3000 and 2850 cm-1 is due to aliphatic hydrogens

The carbonyl (C=O) absorption range of 1690-1760 cm-1 is a strong indicator of functional groups such as aldehydes, ketones, carboxylic acids, esters, amides, anhydrides, or acyl halides To specifically confirm the presence of an aldehyde, one can look for C-H absorption occurring between 2840 and 2720 cm-1.

• The O-H or N-H absorption between 3200 and 3600 cm-1 This indicates either an alcohol, N-H containing amine or amide, or carboxylic acid For -NH2 a doublet will be observed.

Nuclear Magnetic Resonance Spectroscopy

Nuclear magnetic resonance (NMR) spectroscopy is a technique that utilizes the magnetic properties of specific nuclei It plays a crucial role in organic chemistry, with proton NMR and carbon-13 spectroscopy being its most significant applications.

An NMR spectrum offers valuable insights into the chemical structure of a molecule, similar to how Infrared spectroscopy identifies functional groups By analyzing the NMR spectrum, one can determine the number and types of chemical entities present, enhancing our understanding of molecular composition.

NMR can be applied to a wide variety of samples, both in the solution and the solid state

In this unit proton NMR is introduced and its application identification of organic compounds is demonstrated.

Nuclei exhibit mechanical spin, also known as angular momentum, which is determined by their nuclear spin or spin number This spin number can take on values such as 0, 1/2, or 3/2, depending on the specific nucleus The spin number's numerical value is intricately linked to both the mass number and atomic number of the nucleus.

Mass number Atomic number Spin number I odd Even or odd ẵ , 3/2 ,5/2, …. even even 0

The spinning nucleus results into a magnet field around the nucleus Thus the nucleus iseveodd 1,

5.2.2 Formative Assessment i) Differentiate between nuclear magnetic moment and Nuclear Spin number ii) State which of the following Nuclei have a magnetic moment a) O mass number 16, Atomic Number 8, b) Carbon Mass number 12, atomic number 6, c) Nitrogen Mass number 14 atomic number d) carbon 13, e) proton

Proton NMR

The most useful nuclei for organic NMR the proton Mass Num 1 A.M 1 and Carbon 13 because they occur in many organic compounds.

The proton possesses a spin number of ½, allowing the magnetic nucleus to adopt one of two orientations in relation to the applied magnetic field Consequently, a proton can align with the magnetic field in two distinct energy states of ± μ.H, where H represents the strength of the external magnetic field.

Therefore these energy levels are said to be quantised.

In a static external magnetic field, a proton can adopt only two energy states, which are ±μH The lower energy state occurs when the nuclear magnetic moment is aligned parallel to the magnetic field, while the higher energy state occurs when it is aligned antiparallel Transitions between these states can be induced by electromagnetic radiation, with the required frequency v calculated as v = -2μHo/h, where Ho represents the strength of the external magnetic field Unlike absorption in UV and IR, the frequency ν for this transition is influenced by the applied magnetic field.

These Radiation induced Transitions obey the following Rules

1 The probability of an upward transition by absorption of energy from the magnetic field is exactly equal to the probability of a downward transition by a process stimulated by the field.

2 Spontaneous transition from a higher-energy state to a lower-energy state is negligible.

Radiation effects alone there do not cause observable NMR However there are two radiation less effect that occur one of which makes NMR possible

1 Two neibhouring nucei can exchange spin one becoming anti parallel and the other parallel- This is called Spin- Spin Relaxiation

The lattice effect occurs due to the collective influence of multiple nuclei experiencing different energy transitions This process leads to some anti-parallel nuclei losing energy and aligning parallel, resulting in a slight surplus of nuclei at lower energy levels It is from this small excess that certain nuclei are able to absorb energy.

Not all hydrogen atoms within a molecule absorb at the same frequency (ν) The magnetic influence experienced by a hydrogen nucleus is represented by Heff = Ho - δHo, where δHo, known as the chemical shift, quantifies the electronic effects of neighboring atoms on a specific proton The shift parameter (δ) is defined accordingly.

∆v=Frequency of Proton- Frequency of standard (TMS)

In Proton NMR, relative absorption values are obtained using a standard reference, which is essential for determining the chemical shift values of protons in a compound This standard can be utilized in two ways: as an external reference, typically placed in a small capillary within the sample tube, or as an internal reference, where it is dissolved in the sample solution The most commonly used standard in modern Proton NMR is Tetra Methyl Silane (TMS).

5.3.3 Correlation of HNMR With Structure

Proton resonance frequencies can be accurately measured to within ±0.02 ppm when referenced against an internal standard Figure 27 illustrates the correlation between structural types and their corresponding absorption positions, focusing on functional groups that are bonded to saturated carbon atoms All absorption values mentioned in this context are expressed as δ values.

Figure 27: Chemical Shift Parameters of Different Hydrogen atoms

The electrons around the proton create a magnetic field that opposes the applied field

Electronegative groups bonded to the C-H system reduce the electron density around protons, leading to decreased shielding, or deshielding, which results in an increased chemical shift The cumulative effect of multiple electronegative groups further enhances deshielding, causing even larger chemical shifts.

The inductive effects of electronegative groups extend beyond neighboring protons, influencing electron density throughout the molecular chain However, this effect diminishes quickly with distance from the electronegative group.

In a molecule, each proton participates in a spin transition with nearly identical energy The absorption bands, indicated by their enclosed areas, reflect the ratio of protons in distinct groups For instance, the low-resolution spectrum of ethanol displays three absorption peaks in a 1:2:3 area ratio, which corresponds to the functional groups —OH, —CH2—, and —CH3, respectively.

Figure 28: Low Resolution NMR Spectrum of Ethanol

Under higher resolution the peaks of ethyl alcohol attributed to methylene and methyl protons appear as multiplets.

The absorption of methyl (CH3) groups is divided into three peaks with a relative area ratio of 1:2:1, while methylene (CH2) groups show four peaks with a relative area ratio of 1:3:3:1 This phenomenon occurs because the methyl CH3 group interacts with the CH2 group, resulting in a split into four peaks, whereas the methylene CH2 group interacts with the methyl CH3 group, causing it to split into three peaks This interaction is known as spin-spin coupling.

The magnitude of multiple separation caused by spin-spin interactions remains unaffected by the strength of the applied magnetic field As protons become more deshielded, their chemical shift increases However, predicting this shift can be challenging due to the influence of factors like solvation, acidity, concentration, and temperature on hydrogen bonding.

MASS SPECTROMETRY

List Of Relevant Useful Links

http://ull.chemistry.uakron.edu/analytical/Mass_Spec/index.html/

Mass Spectrometry

Mass spectrometer identifies compounds by ionizing the compound and breaking the compound into pieces called fragment and analyzing these fragments by passing the pieces

The separated ions are then detected and tallied, and the results are displayed on a computer.

Because ions are very labile (as they would react with ambient species) their formation and analysis is conducted in a vacuum.

In the ion source, high-energy electrons emitted from a heated filament collide with sample molecules, resulting in ion formation through electron bombardment These ions are then directed away by a charged repeller plate and accelerated through slits in electrodes, creating an ion beam During this process, some ions may fragment into smaller cations and neutral fragments, ultimately producing a substantial number of cations from the initial molecule, which contribute to the formation of the ion beam.

A mass spectrometer effectively separates and detects ions with slightly different masses, allowing for the clear distinction of isotopes within an element This capability is particularly evident in compounds containing bromine and chlorine For instance, the spectrum of bromine, which consists of only two atoms, reveals five distinct peaks rather than a single atomic mass of 80 amu, indicating that natural bromine is composed of nearly equal amounts of isotopes with atomic masses of 79 and 81 amu Consequently, bromine molecules can consist of two isotopes, showcasing the mass spectrometer's precision in isotope identification.

Bromine exists in various isotopes, including 79Br (mass 158 amu) and 81Br (mass 162 amu), with the most common combination being 79Br-81Br (mass 160 amu) When bromine molecules (Br2) fragment, they produce bromine cations that result in equal-sized ion peaks at 79 and 81 amu This behavior is significant in the context of compounds like bromine, methylene chloride, and vinyl chloride.

Figure 35: Mass spectra of Bromine, Vinyl Chloride, Methylene Chloride isotopic composition of chlorine and bromine is: Chlorine: 75.77% 35 Cl and 24.23% 37 Cl Bromine: 50.50% 79 Br and 49.50% 81 Br

Chlorine and bromine in molecules or ions can be detected through the intensity ratios of ions that differ by 2 amu For instance, methylene chloride exhibits a molecular ion with three peaks at m/z 86 and 88 amu, with diminishing intensities based on their natural abundances The loss of a chlorine atom results in two isotopic fragment ions at m/z 51 amu, indicating the presence of a single chlorine atom In contrast, fluorine and iodine are monoisotopic, with masses of 19 amu and 127 amu, respectively It's important to note that the presence of halogen atoms does not alter the odd-even mass rules.

Carbon and sulfur are two elements with significant isotope signatures, with natural abundances of 1.1% for carbon-13 (13C), 0.76% for sulfur-33 (33S), and 4.22% for sulfur-34 (34S) In the spectrum of 4-methyl-3-pentene-2-one, a small peak at low m/z amu indicates the presence of a single 13C atom in the molecular ion Additionally, while less impactful, nitrogen-15 (15N) and oxygen-18 (18O) contribute minor amounts to the higher mass satellites of molecular ions that include these elements.

Fragmentation Patterns

The characteristics of the fragments in mass spectrometry offer insights into the molecular structure of compounds However, if the molecular ion's lifetime is shorter than a few microseconds, it may not be detected Typically, organic compounds produce mass spectra featuring a molecular ion, and adjusting the ionization conditions can sometimes reveal the molecular ion even in cases where it is initially absent.

Simple organic compounds exhibit varying stability in their molecular ions, with aromatic rings, conjugated pi-electron systems, and cycloalkanes being the most stable In contrast, alcohols, ethers, and highly branched alkanes tend to fragment more readily The stable fragments produced during this process are prominently featured in the resulting spectrum.

5.7.1 Hydrocarbons cations The positive charge commonly resides on the smaller fragment, so we see a homologous series of hexyl (m/z = 85), pentyl (m/z = 71), butyl (m/z = 57), propyl (m/z = 43), ethyl (m/z = 29) and methyl (m/z = 15) cations These are accompanied by a set of corresponding alkenyl carbocations (e.g m/z = 55, 41 &27) formed by loss of 2 H All of the significant fragment ions in this spectrum are even-electron ions In most alkane spectra the propyl and butyl ions are the most abundant.

The presence of a functional group with a heteroatom (Y = N, O, S, etc.) can significantly influence a compound's fragmentation pattern This effect arises from the localization of the radical cation on the heteroatom, making it easier to ionize non-bonding electrons than those in covalent bonds As a result, certain fragmentation processes are favored, leading to the formation of even-electron and odd-electron ions, as illustrated in the accompanying diagram The diagram highlights examples of localized molecular ions and distinguishes between single electron shifts and electron pair shifts using different curved arrows.

Figure 36: Hetero atom cleavage adopted from Spectroscopy: http://www.cem.msu.edu/~reusch/VirtualText/Spectrpy/spectro.htm# contnt accessed Feb 2008

Charge distributions are typical in cleavage processes, where the charge can occasionally be associated with neutral species Both fragment ions typically arise from alpha-cleavages Additional examples illustrating the impact of functional groups on fragmentation can be explored by clicking the button on the left.

Mass spectra serve as unique "fingerprints" for identifying various compounds, including environmental pollutants, pesticide residues, and controlled substances Even minute samples, weighing a microgram or less, can be effectively analyzed For instance, a forensic laboratory can utilize the mass spectrum of cocaine to ascertain the composition of an unknown street drug Despite significant fragmentation, the more abundant ions can be understood through specific fragmentation mechanisms.

Figure 37: A Finger print Mass Spectrum of Cocain

Odd-electron fragment ions typically arise from specific rearrangements that result in the loss of stable neutral fragments The mechanisms behind these rearrangements have been elucidated through the analysis of isotopically labeled molecular ions.

1) An organic compound (A) is composed of carbon, hydrogen and nitrogen, with carbon constituting over 60% of the mass It shows a molecular ion at m/z2 amu in the mass b How many Rings + Double Bonds must be present in compound A?

2) Another compound, B, composed only of carbon, hydrogen and oxygen, also shows a molecular ion at m/z2 amu. a Write a plausible Molecular Formula for compound B, assuming it has three double bonds and no rings C H O

3) Compound C is composed only of carbon, hydrogen and oxygen, and shows a molecular ion at m/z0 amu Carbon accounts for 60% of the molecular mass. a) Write a plausible Molecular Formula for compound C C H O c) How many Rings + Double Bonds must be present in compound C?

In Unit I, we revisited essential separation methods taught in school, focusing on solvent extraction and distillation, where definitions, appropriate application conditions, and necessary equipment were discussed The unit then introduced chromatography techniques, starting with general theory and various development types Key chromatography methods, including paper and thin-layer chromatography, were covered, along with the equipment used for these techniques The discussion progressed to column chromatography, detailing instrumentation, types of columns, and detectors Finally, liquid chromatography and High-Performance Liquid Chromatography (HPLC) were explored in depth, covering HPLC applications, instrumentation, and major separation modes.

In Unit II, key electrochemical techniques were explored, focusing on potentiometry, which covered its theory and practical applications in pH measurement using glass electrodes, ion-selective electrodes, and Redox electrodes, particularly in automatic titration systems The unit also delved into various voltammetry techniques, beginning with an overview of voltammetric theory, followed by polarographic methods utilizing the dropping mercury electrode The discussion concluded with an examination of cyclic and anodic stripping voltammetry techniques.

Spectroscopy encompasses various techniques that analyze the interaction between radiation and matter, utilizing components of the electromagnetic spectrum and their associated energies This field is essential for both qualitative and quantitative analysis in molecular and atomic spectroscopy Key to atomic spectroscopy are three primary modes, each defined by specific phenomena that facilitate their application in analysis The discussion also highlights the instrumentation integral to atomic spectroscopy, emphasizing its importance in accurate measurements and data interpretation.

The article explores the transitions responsible for UV-visible spectra and their relationship to specific functional groups, detailing the factors influencing the absorption of these groups It provides examples of UV spectroscopy in structural determination and concludes with its applications in quantitative analysis and instrumentation Additionally, the article introduces IR spectroscopy, discussing its origins, typical absorption peaks of major functional groups, and the correlation between IR spectra and molecular structure.

Molecular Spectroscopy 2 explored nuclear magnetic resonance (NMR) spectroscopy, detailing the NMR phenomena and the necessary conditions for a nucleus to exhibit these effects, as well as the impact of its structural environment The session highlighted the correlation between hydrogen NMR and specific functional groups in molecules, addressing spin-spin interactions and the relationship between peak magnitude and the number of hydrogen atoms, along with peak positions related to the molecular environment The unit concluded with a discussion on carbon NMR.

13 NMR this discussion highlighted the C-13 NMR, technical limitation of information provided by C-13 NMR, how it is used to complement Hydrogen NMR in structural determination.

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