| Tài liệu tham khảo |
Loại |
Chi tiết |
| [1] E. J. Houtgast, V. Sima, K. Bertels and Z. Al-Ars, "An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm," 2015 International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS), Samos, 2015, pp. 221-227 |
Sách, tạp chí |
| Tiêu đề: |
An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm |
| Tác giả: |
E. J. Houtgast, V. Sima, K. Bertels, Z. Al-Ars |
| Nhà XB: |
2015 International Conference on Embedded Computer Systems: Architectures, Modeling, and Simulation (SAMOS) |
| Năm: |
2015 |
|
| [2] N. Ahmed, V. Sima, E. Houtgast, K. Bertels and Z. Al-Ars,"Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm," 2015 IEEE/ACM International Conference on Computer-Aided Design (ICCAD), Austin, TX, 2015, pp. 240-246 |
Sách, tạp chí |
| Tiêu đề: |
Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm |
| Tác giả: |
N. Ahmed, V. Sima, E. Houtgast, K. Bertels, Z. Al-Ars |
| Nhà XB: |
IEEE/ACM International Conference on Computer-Aided Design (ICCAD) |
| Năm: |
2015 |
|
| [3] Li, Heng. (2013). Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. ArXiv. 1303 |
Sách, tạp chí |
| Tiêu đề: |
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM |
| Tác giả: |
Heng Li |
| Nhà XB: |
ArXiv |
| Năm: |
2013 |
|
| [4] Pulka, Andrzej & Milik, Adam. (2011). An Efficient HardwareImplementation of Smith-Waterman Algorithm Based on the Incremental Approach. International Journal of Electronics and Telecommunications |
Sách, tạp chí |
| Tiêu đề: |
An Efficient HardwareImplementation of Smith-Waterman Algorithm Based on the Incremental Approach |
| Tác giả: |
Andrzej Pulka, Adam Milik |
| Nhà XB: |
International Journal of Electronics and Telecommunications |
| Năm: |
2011 |
|
| [5] Li, Heng & Durbin, Richard. (2010). Fast and Accurate Long-Read Alignment with Burrows-Wheeler Transform. Bioinformatics (Oxford, England). 26. 589-95. 10.1093/bioinformatics/btp698 |
Sách, tạp chí |
| Tiêu đề: |
Fast and Accurate Long-Read Alignment with Burrows-Wheeler Transform |
| Tác giả: |
Heng Li, Richard Durbin |
| Nhà XB: |
Bioinformatics (Oxford, England) |
| Năm: |
2010 |
|
| [6] S. Dhar, S. Adya, L. Singhal, M. A. Iyer and D. Z. Pan, "Detailed placement for modern FPGAs using 2D dynamic programming," 2016 IEEE/ACM International Conference on Computer-Aided Design (ICCAD), Austin, TX, 2016, pp. 1-8 |
Sách, tạp chí |
| Tiêu đề: |
Detailed placement for modern FPGAs using 2D dynamic programming |
| Tác giả: |
S. Dhar, S. Adya, L. Singhal, M. A. Iyer, D. Z. Pan |
| Nhà XB: |
IEEE/ACM International Conference on Computer-Aided Design (ICCAD) |
| Năm: |
2016 |
|
| [8] T. Hoang, Dzung & Lopresti, Daniel. (1996). FPGA Implementation of Systolic Sequence Alignment. 10.1007/3-540-57091-8_43 |
Sách, tạp chí |
| Tiêu đề: |
FPGA Implementation of Systolic Sequence Alignment |
| Tác giả: |
T. Hoang, Dzung, Lopresti, Daniel |
| Năm: |
1996 |
|
| [9] Benkrid, Khaled & Akoglu, Ali & Ling, Cheng & Song, Yang & Liu, Ying & Tian, Xiang. (2012). High performance biological pairwise sequence alignment: FPGA versus GPU versus cell BE versus GPP.International Journal of Reconfigurable Computing. 2012 |
Sách, tạp chí |
| Tiêu đề: |
High performance biological pairwise sequence alignment: FPGA versus GPU versus cell BE versus GPP |
| Tác giả: |
Khaled Benkrid, Ali Akoglu, Cheng Ling, Yang Song, Ying Liu, Xiang Tian |
| Nhà XB: |
International Journal of Reconfigurable Computing |
| Năm: |
2012 |
|
| [10] Zhang, Peiheng & Tan, Guangming & R. Gao, Guang. (2007).Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform. 39-48. 10.1145/1328554.1328565 |
Sách, tạp chí |
| Tiêu đề: |
Implementation of the Smith-Waterman algorithm on a reconfigurable supercomputing platform |
| Tác giả: |
Zhang, Peiheng, Tan, Guangming, R. Gao, Guang |
| Năm: |
2007 |
|
| [11] Li, Heng & Homer, Nils. (2010). Li, H. & Homer, N. A survey of sequence alignment algorithms for next-generation sequencing. Brief Bioinform. 11, 473-483. Briefings in bioinformatics. 11. 473-83.10.1093/bib/bbq015 |
Sách, tạp chí |
| Tiêu đề: |
A survey of sequence alignment algorithms for next-generation sequencing |
| Tác giả: |
Heng Li, Nils Homer |
| Nhà XB: |
Briefings in bioinformatics |
| Năm: |
2010 |
|
| [12] Starzyk, Janusz & Guo, Yongtao. (2003). Dynamically Self-Reconfigurable Machine Learning Structure for FPGA Implementation.296-299 |
Sách, tạp chí |
| Tiêu đề: |
Dynamically Self-Reconfigurable Machine Learning Structure for FPGA Implementation |
| Tác giả: |
Janusz Starzyk, Yongtao Guo |
| Năm: |
2003 |
|
| [13] Starzyk, Janusz & Guo, Yongtao & Zhu, Zhineng. (2004). Dynamically Reconfigurable Neuron Architecture for the Implementation of Self- Organizing Learning Array.. 18. 10.1109/IPDPS.2004.1303122 |
Sách, tạp chí |
| Tiêu đề: |
Dynamically Reconfigurable Neuron Architecture for the Implementation of Self- Organizing Learning Array |
| Tác giả: |
Janusz Starzyk, Yongtao Guo, Zhineng Zhu |
| Nhà XB: |
IEEE |
| Năm: |
2004 |
|
| [14] P. S. Sidhu, Reetinder & Mei, Alessandro & Prasanna, V. (1999).Genetic Programming Using Self-Reconfigurable FPGAs. 1673. 301- 312. 10.1007/978-3-540-48302-1_31 |
Sách, tạp chí |
| Tiêu đề: |
Genetic Programming Using Self-Reconfigurable FPGAs |
| Tác giả: |
P. S. Sidhu, Reetinder Mei, Alessandro Prasanna |
| Nhà XB: |
Springer |
| Năm: |
1999 |
|
| [16] K. B. Ernst Joachim Houtgast, Vlad-Mihai Sima and Z. Al-Ars, “Gpu- accelerated bwa-mem genomicmapping algorithm using adaptive load balancing,”Architecture of Computing Systems-ARCS, pp. 130–142, 2016 |
Sách, tạp chí |
| Tiêu đề: |
Gpu- accelerated bwa-mem genomicmapping algorithm using adaptive load balancing |
| Tác giả: |
K. B. Ernst, Joachim Houtgast, Vlad-Mihai Sima, Z. Al-Ars |
| Nhà XB: |
Architecture of Computing Systems-ARCS |
| Năm: |
2016 |
|
| [17] K. B. Ernst Joachim Houtgast, Vlad Mihai Sima and Z. Al-Ars, “An fpga-based systolic array to acceleratethe bwa-mem genomic mapping algorithm,” inEmbedded Computer Systems: Architectures,Modeling,and Simulation (SAMOS), 2015 International Conference on.IEEE, 2015, pp. 221–227 |
Sách, tạp chí |
| Tiêu đề: |
Embedded Computer Systems: Architectures, Modeling, and Simulation |
| Tác giả: |
K. B. Ernst, Joachim Houtgast, Vlad Mihai Sima, Z. Al-Ars |
| Nhà XB: |
IEEE |
| Năm: |
2015 |
|
| [18] R. T. a. A.-A. Nagarajan Kathiresan, “Performance improvement of bwa mem algorithm using data-parallel with concurrent parallelization,” in IEEE- 2014 International Conference on Parallel, Distributedand Grid Computing (PDGC). IEEE, 2014 |
Sách, tạp chí |
| Tiêu đề: |
Performance improvement of bwa mem algorithm using data-parallel with concurrent parallelization |
| Tác giả: |
R. T. a. A.-A. Nagarajan Kathiresan |
| Nhà XB: |
IEEE |
| Năm: |
2014 |
|
| [19] “Bioinformatics: A Practical Handbook of Next Generation Sequencing and Its Applications”, published in June 29, 2017. ISBN-10:9789813144743 |
Sách, tạp chí |
| Tiêu đề: |
Bioinformatics: A Practical Handbook of Next Generation Sequencingand Its Applications |
|
| [20] “Bioinformatis: A Concept-Based Introduction”, published in October 20, 2008. ISBN-10: 9789813144743 |
Sách, tạp chí |
| Tiêu đề: |
Bioinformatis: A Concept-Based Introduction |
|
| [21] P. Ferragina, G. Manzini, V. M ̈akinen, and G. Navarro, “An alphabet- friendly fm-index,” inString Pro-cessing and Information Retrieval.Springer, 2004, pp. 228–228 |
Sách, tạp chí |
| Tiêu đề: |
String Processing and Information Retrieval |
| Tác giả: |
P. Ferragina, G. Manzini, V. M ̈akinen, G. Navarro |
| Nhà XB: |
Springer |
| Năm: |
2004 |
|
| [22] A. W. T. F. J. R. N. H. G. M. G. A. R. D. Heng Li, Bob Handsaker, “The sequence alignment/map formatand samtools,”Bioinformatics, vol. 25, no. 16, pp. 2078–2079, 2009.[23] Wikipedia |
Sách, tạp chí |
| Tiêu đề: |
The sequence alignment/map format and samtools |
| Tác giả: |
A. W. T. F. J. R. N. H. G. M. G. A. R. D. Heng Li, Bob Handsaker |
| Nhà XB: |
Bioinformatics |
| Năm: |
2009 |
|